Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k10r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    29   0.96 
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   6.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 427 AEKGLHLMNELLSCHHSLIPKLGASERDKFTS 332
           +++   ++NE+LSC  S +  L A E D+ T+
Sbjct: 143 SDEHFEIVNEILSCFKSSVVYLSAKEHDRITA 174


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 596 PFVHIVPSPPSYKTIRLFWEISRSIP 673
           PFV+I P   S KTI  F+ I  S P
Sbjct: 483 PFVYINPDDTSIKTIVDFYGIDPSFP 508


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 618 VPQVIKQYDSSGKSQDPYRSLQHL 689
           V +++K+YDSS    + Y  L+HL
Sbjct: 617 VKKILKKYDSSVSVWNTYAQLEHL 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,241
Number of Sequences: 5004
Number of extensions: 59394
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)