Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k10r
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0393 + 17255315-17256019,17256107-17257909                       30   2.3  
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536...    29   3.1  
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852     28   7.1  

>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 540 AVKKQINCQIEVVKKIKEPLLYTLSQVPQVIKQYD 644
           + KKQ+   IE +KK K+  + +L ++ Q+IKQ D
Sbjct: 687 SAKKQVIRAIEKIKKAKDAEVRSLDRLDQLIKQID 721


>05_01_0599 +
           5368091-5368123,5368212-5368383,5369237-5369335,
           5369636-5369748,5369824-5369916,5370081-5370244,
           5370328-5370564,5370739-5370883,5370982-5371160,
           5371997-5372142,5372239-5372366,5372441-5372614,
           5372706-5372735,5373219-5373380,5373460-5373705,
           5373733-5373870,5373974-5374174,5374304-5374448,
           5374575-5374681,5374830-5374970,5375274-5375539,
           5375621-5375745,5375843-5376109,5376250-5376263
          Length = 1174

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 724 ISEVSVVIKRCIRCCRDRYGS*DF---PEESYCFITWGTWDNVYKRGSLI 584
           + + ++++K+ + CC+ +YG   F   P +S+ +++   +D +   G LI
Sbjct: 62  LEDQTLIVKKVLECCQIKYGHYRFGSNPNKSHYYLSCQIFDIIKHNGRLI 111


>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
          Length = 764

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 662 RSIPVPATSYASLNNNTHFRY 724
           RS  VP +SY S+N +T +RY
Sbjct: 113 RSSDVPTSSYTSINGSTTYRY 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,688
Number of Sequences: 37544
Number of extensions: 340301
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)