Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k10r
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    28   6.3  

>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = -1

Query: 643 SYCFITWGTWDNVYKRGSLIFLTTSI*QFICFLTAVMIYITLICFKNTFILQCV*RSYAF 464
           S CF+ +GT  N      + F+T S+   +  L    IYI  +C  +  +   +  S ++
Sbjct: 28  SICFV-FGTLGNTAVLSYVFFITRSLKSSVTALGNTFIYIVALCAVDLLVTVSIPFSLSY 86

Query: 463 RTASSQIFVEGYAEKGLHLMNEL 395
              ++ +F E   +  +H M EL
Sbjct: 87  MILNNWVFGELVCK--IHFMLEL 107


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 430 YAEKGLHLMNELLSCHHSLIP---KLGASERDKFTSVQTTLSIQDPSCSLS 287
           YA+K   ++N     HH+++    +LG    D+F   +  L  QD +C +S
Sbjct: 186 YADKNQKILNLNQELHHTILDGENRLGHINEDRFEDQKNQLEKQDDTCFVS 236


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 534 MTAVKKQINCQIEVVKKIKEPLLYTLSQVPQVIKQYDSSGKSQDPYRSLQHLMHLLITTL 713
           M+   KQ+N  + V++K  + +   +S   + + +YDS G++Q      ++L  L  +T+
Sbjct: 398 MSENMKQLNADLVVIEKQHKTVKDQISLASEELHEYDSQGEAQIMAHHTKYLDLLSKSTM 457

Query: 714 TSD 722
             D
Sbjct: 458 LDD 460


>AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical
           protein Y47D3A.1 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -1

Query: 466 FRTASSQIFVEGYAEKGLHLMNELLSCHHSLIPKLGASERDKFTSVQTTLSIQDPSCSLS 287
           +RT    ++     E  + L   +  CH SL      + R  F S + TL +    C + 
Sbjct: 296 YRTQQRSMYTLDVVEINIKLTRIMEKCHGSLFNNFVPNVRTIFPSNKITLKLSKEVCKVL 355

Query: 286 S*IDSVADCI 257
              D+V D I
Sbjct: 356 MNPDNVEDFI 365


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 644 VVLFYNLGDLGQCVQKGFLNFFDNFNLTIYLFFNCSHDLYNFDLL 510
           ++LF  LG +  C +     F  NFN + +++F+ S+DL  F  L
Sbjct: 46  IILFALLGLIFSCTEMLARPFVHNFNAS-FVYFSLSNDLSEFKSL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,153
Number of Sequences: 27780
Number of extensions: 325792
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)