Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k10f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.7  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   5.2  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   6.8  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   6.8  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   6.8  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   9.0  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 87   NKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPL 263
            +KI+ ++  +     +K  P    + H++S    + L++  SI N+ P     F  KEP 
Sbjct: 919  DKIRVRVLGIHDSRNHKFLP----ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQ 969

Query: 264  FEKDASVPARFQRMREEFCKIGMRRSVEG 350
            F+K   V      + +E   + +  SV G
Sbjct: 970  FKKGDEVTGFVNNVSKECVWVSLTPSVNG 998


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 329
           P L+ +    P+  +  NRS+  +  ++YT  +   ++E +   PAR    + +EF ++ 
Sbjct: 77  PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136

Query: 330 MRRSVEG 350
           ++ S  G
Sbjct: 137 LQCSACG 143


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 489 LGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLF 629
           L R+  +  + +   T  + WR N EP     +  HI+  K++ ++F
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIF 252


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 165 HQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIG 329
           H IS + ++ +   R+  L  L+     +  PLF++D S    ++   E+ C IG
Sbjct: 389 HHISGS-AVRMAEERNTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEKRCSIG 442


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 465 LKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQY 578
           ++RL  ET   ++  K   L+ + +     PNF+PP+Y
Sbjct: 221 IRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKY 258


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 123 PPGNKQWPARPGLQHQISQNPSMNLTLNRSI 215
           PPG+  W A+P       ++PS   TL + I
Sbjct: 68  PPGSPYWEAKPVSHTVFLESPSDVFTLEKPI 98


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 367 NMVSLMCCYCNSALRFSSCP 426
           N + L  CYC ++   S+CP
Sbjct: 185 NRILLESCYCENSTGMSTCP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,558
Number of Sequences: 5004
Number of extensions: 52807
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)