Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k10f
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 181 5e-46
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 105 3e-23
02_01_0382 - 2772378-2773544 31 0.57
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 28 7.0
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 7.0
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 7.0
01_05_0356 - 21338488-21340062 28 7.0
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 27 9.3
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 27 9.3
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 27 9.3
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 27 9.3
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 181 bits (440), Expect = 5e-46
Identities = 82/140 (58%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
Frame = +3
Query: 213 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 392
+N+YPL NYTFGTKEP EKD SV RF RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 393 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 569
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 570 PQYPYIPPHITKPKEHKRLF 629
YPY PPHITKPKE K+LF
Sbjct: 129 VMYPYCPPHITKPKECKKLF 148
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 105 bits (252), Expect = 3e-23
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Frame = +3
Query: 213 INLYPLTNYTFGTKEPLFEKDAS----VPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 380
+ +YPL Y FG ++ + R R++ F G+R SV GVLLV P
Sbjct: 23 VEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKANFAAHGLRTSVHGVLLVELFDHP 82
Query: 381 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQDGV----KQEWLIEDTI 539
HVLLLQ+ + F LPGG L PGE ++ GLKR L+ L G QD EW I + I
Sbjct: 83 HVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLSVAGHQDDEDGDGDDEWQIGECI 142
Query: 540 GNWWRPNFEPPQYPYIPPHITKPKEHKRLF 629
G WWR F+ +PY+ P+ PKE +LF
Sbjct: 143 GMWWRSEFDAAPFPYLLPNARAPKECIKLF 172
>02_01_0382 - 2772378-2773544
Length = 388
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 318 KTPLASSGTSPGPTRLSRTAA 256
K P+ASS TSP P+RL R+A+
Sbjct: 5 KQPMASSSTSPSPSRLPRSAS 25
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 153 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFE 269
PGL + +N S+NL + N+ L Y + TK + E
Sbjct: 24 PGLNDTVFKNESLNLMSVQHQNIVKLIGYCYETKNKVVE 62
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Frame = +3
Query: 333 RRSVEGVLLVHEH-------GLPHVLLLQLGTAFFK----LPG--GELNPGEDEIDGLKR 473
RR++ G+L EH G H LL +LGT + L G GEL +DE++ +
Sbjct: 504 RRAMNGLLTEMEHAVVSAAEGAIHTLLGKLGTIVLQEAQLLGGIRGELQHLKDELESMTA 563
Query: 474 LLTETLGRQDGVKQ 515
L + GR + KQ
Sbjct: 564 FLQDLSGRDECGKQ 577
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 326 RNEKVSRRCVIST*TWSPSCAVTATRHCVFQVARWRIESWRG 451
R +VSR+ T S T T C F RWR++ G
Sbjct: 49 RGRRVSRQLYAVPVTPSSMAPATRTARCTFSWRRWRLDGGGG 90
>01_05_0356 - 21338488-21340062
Length = 524
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 EPLFEKDASVPARFQRMREEFCKIGM-RRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGG 431
E ++ P F+ +F G RR G+ L E +P++L L L ++LP G
Sbjct: 435 ERFLAREGKAPVDFRGKEADFIPFGSGRRLCPGIPLA-ERVMPYILALMLREFEWRLPDG 493
Query: 432 ELNPGEDEI 458
++P E ++
Sbjct: 494 -VSPEELDV 501
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 218 INRPIES*IHAWVLAYLML*SWSRRPLFVTGR 123
I RP++S + W L+ L L +W P FV +
Sbjct: 260 IGRPVKSLLAVWGLSGLKLKTWVEAPSFVRAK 291
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 27 VCLGKTIFSCDHLCIRGFVENKIKYKMAAVQGPPGNKQW 143
V L I CD +C RGF + + + A P G++ W
Sbjct: 325 VTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGW 363
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 84 ENKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNLTLNRSINLYPL 230
+NK++Y ++ Q NK WP P L ++ N++L + + L L
Sbjct: 657 KNKLRYGLSHQQIMDLNKTWPLHPILLIHLASELPKNVSLMQVVRLLHL 705
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 326 DFTKLLSHPLEPRRDRRVFLEQRLLSSERVIRKRI 222
D P +PR + R + QR+LS ER +R+ +
Sbjct: 1597 DIDSFARRPRKPRFETREEVNQRMLSVERAVREAL 1631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,061
Number of Sequences: 37544
Number of extensions: 357393
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -