Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k10f
(630 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside dipho... 281 1e-75
AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage facto... 281 1e-75
BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein pr... 279 4e-75
CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein. 279 8e-75
D29642-1|BAA06125.2| 666|Homo sapiens KIAA0053 protein. 31 2.5
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 31 2.5
AC097495-2|AAY15074.1| 558|Homo sapiens unknown protein. 31 2.5
>BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside
diphosphate linked moiety X)-type motif 21 protein.
Length = 227
Score = 281 bits (690), Expect = 1e-75
Identities = 124/145 (85%), Positives = 136/145 (93%)
Frame = +3
Query: 195 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 374
LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 375 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWR 554
LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LGRQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 555 PNFEPPQYPYIPPHITKPKEHKRLF 629
PNFEPPQYPYIP HITKPKEHK+LF
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLF 175
>AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage factor I
25 kDa subunit protein.
Length = 227
Score = 281 bits (690), Expect = 1e-75
Identities = 124/145 (85%), Positives = 136/145 (93%)
Frame = +3
Query: 195 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 374
LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 375 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWR 554
LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LGRQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 555 PNFEPPQYPYIPPHITKPKEHKRLF 629
PNFEPPQYPYIP HITKPKEHK+LF
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLF 175
>BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein
protein.
Length = 227
Score = 279 bits (685), Expect = 4e-75
Identities = 123/145 (84%), Positives = 136/145 (93%)
Frame = +3
Query: 195 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 374
LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 375 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWR 554
LPHVLLLQLGT FFKLPGGEL+PGEDE++GLKRL+TE LGRQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELDPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 555 PNFEPPQYPYIPPHITKPKEHKRLF 629
PNFEPPQYPYIP HITKPKEHK+LF
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLF 175
>CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein.
Length = 227
Score = 279 bits (683), Expect = 8e-75
Identities = 123/145 (84%), Positives = 135/145 (93%)
Frame = +3
Query: 195 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 374
LTL R+INLYPLTNYTFGTKEPL+EK +SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKGSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 375 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWR 554
LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LGRQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 555 PNFEPPQYPYIPPHITKPKEHKRLF 629
PNFEPPQYPYIP HITKPKEHK+LF
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLF 175
>D29642-1|BAA06125.2| 666|Homo sapiens KIAA0053 protein.
Length = 666
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 429 GELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFE 566
G+ N GE+EID L+R++ E R++ Q+ + E+ I N + N++
Sbjct: 562 GKKNSGEEEIDSLQRMVQEL--RKEIETQKQMYEEQIKNLEKENYD 605
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 31.5 bits (68), Expect = 2.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 531 DTIGNWWRPNFEPPQYPYIPPHITKPKEH 617
D IG++ +P PQ P +PPH+ +P EH
Sbjct: 818 DPIGHFTQPILHLPQ-PELPPHLPQPPEH 845
>AC097495-2|AAY15074.1| 558|Homo sapiens unknown protein.
Length = 558
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 429 GELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFE 566
G+ N GE+EID L+R++ E R++ Q+ + E+ I N + N++
Sbjct: 454 GKKNSGEEEIDSLQRMVQEL--RKEIETQKQMYEEQIKNLEKENYD 497
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,099,362
Number of Sequences: 237096
Number of extensions: 1983927
Number of successful extensions: 5577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5567
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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