Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k09f
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical ... 177 3e-45
L17337-6|AAA28221.2| 44|Caenorhabditis elegans Hypothetical pr... 32 0.20
Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical pr... 27 4.3
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un... 27 5.7
Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 26 10.0
U23181-2|AAC48208.1| 112|Caenorhabditis elegans Insulin related... 26 10.0
AF016655-4|AAY55854.1| 144|Caenorhabditis elegans Hypothetical ... 26 10.0
>AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical
protein Y106G6H.3 protein.
Length = 113
Score = 177 bits (431), Expect = 3e-45
Identities = 81/109 (74%), Positives = 95/109 (87%)
Frame = +2
Query: 56 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 235
M A K +K E+INSRL++VMK+G+Y LGYKQTLK+L GKAKLVIIA N PPLRKSEI
Sbjct: 1 MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60
Query: 236 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 382
EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P
Sbjct: 61 EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVP 109
>L17337-6|AAA28221.2| 44|Caenorhabditis elegans Hypothetical
protein ZK686.1 protein.
Length = 44
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 113 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 208
+VMK+G+Y L Y+Q LK+L AKLVI K+
Sbjct: 1 MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31
>Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical
protein LLC1.3 protein.
Length = 495
Score = 29.9 bits (64), Expect = 0.81
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 29 GFISIYAPKMVAAKKQKKTIESINSRLALV 118
GF +I P V AKK ++E+IN+R L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167
>Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical
protein F53H4.4 protein.
Length = 275
Score = 27.5 bits (58), Expect = 4.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 35 ISIYAPKMVAAKKQKKTIESINSRLALVM------KSGKYCLGYKQTLKTLRQGKAKLVI 196
+S P M A K + + + N RLA+ M +SG Y Q ++LR +
Sbjct: 171 LSKLTPSMFAEKARPRRVRERNGRLAVRMSRISWNRSGLYYNAIIQFFESLRG-----TV 225
Query: 197 IAKNAPPLRKSEIEYYALLAKTGVH 271
I + PL + + Y +L T H
Sbjct: 226 ITQGEQPLCEKSVTYQEMLKHTLAH 250
>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 6 protein.
Length = 2098
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 239 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 364
+Y LLA G+ + +ELGTA YY + +T G D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291
>Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical
protein F55B12.6 protein.
Length = 350
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 191 PALLCLVEEFSKFACILSNIFPISSP 114
PAL EEFSKF +L I+P P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 26.2 bits (55), Expect = 10.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 86 WSFSVSLLQPFWERKC 39
W +S+S L P W+++C
Sbjct: 140 WQYSLSFLAPKWDKQC 155
>U23181-2|AAC48208.1| 112|Caenorhabditis elegans Insulin related
protein 6 protein.
Length = 112
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 388 CFRQSGDNVRVTRVCDGECAHSVVFSACC 302
C Q G ++ T C +C+ + SACC
Sbjct: 84 CNPQEGKDI-ATECCGNQCSDDYIRSACC 111
>AF016655-4|AAY55854.1| 144|Caenorhabditis elegans Hypothetical
protein C17F4.11 protein.
Length = 144
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 158 LKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKT-GVHHYSGNNIELGTACGKYYRVCT 334
L+T L II P+ + Y + KT GV HY GN +L + K+ R
Sbjct: 15 LRTYENSNQLLQIIVNARKPVL---VFGYPVSNKTKGVVHYEGNEFDLRSFLKKFNRQME 71
Query: 335 LAITDPGDSDIITTL 379
+ + +D + TL
Sbjct: 72 IFFKESESNDWLFTL 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,076
Number of Sequences: 27780
Number of extensions: 184225
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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