Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k08r
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   2.0  
AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine re...    27   2.7  
AY835433-1|AAX37360.1|  331|Caenorhabditis elegans bZIP transcri...    27   4.7  
AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP transcri...    27   4.7  
AF016440-2|AAB65905.2|  331|Caenorhabditis elegans Abnormal ever...    27   4.7  
AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal ever...    27   4.7  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    26   8.1  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    26   8.1  

>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  VRTSRYHHLAYFCHEAVMHFGLK-CGSAVLTTQTLEL 184
           VRT R+HH A   H  V  FG   C S V  + +L L
Sbjct: 61  VRTHRHHHRAVAAHNTVPSFGRGFCVSPVSLSLSLSL 97


>AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 66 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 171 CVVKTADPHFKPKCITASWQK*ARWWYLLVRTH 73
           CV+     +++  C+     K ARWW LL   H
Sbjct: 104 CVINLHTMYYRTICLKYLDPKKARWWTLLYSVH 136


>AY835433-1|AAX37360.1|  331|Caenorhabditis elegans bZIP
           transcription factor FOS-1b protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 248 PQVGREHEPPINAIKNAPDRHIHTIPTYSL 337
           P + +   PPI+ I+N  DR+I+++P  +L
Sbjct: 158 PSIDQLLLPPISCIQNIKDRNINSMPPPAL 187


>AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP
           transcription factor FOS-1a protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 248 PQVGREHEPPINAIKNAPDRHIHTIPTYSL 337
           P + +   PPI+ I+N  DR+I+++P  +L
Sbjct: 294 PSIDQLLLPPISCIQNIKDRNINSMPPPAL 323


>AF016440-2|AAB65905.2|  331|Caenorhabditis elegans Abnormal
           eversion of vulva protein5, isoform a protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 248 PQVGREHEPPINAIKNAPDRHIHTIPTYSL 337
           P + +   PPI+ I+N  DR+I+++P  +L
Sbjct: 158 PSIDQLLLPPISCIQNIKDRNINSMPPPAL 187


>AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal
           eversion of vulva protein5, isoform b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 248 PQVGREHEPPINAIKNAPDRHIHTIPTYSL 337
           P + +   PPI+ I+N  DR+I+++P  +L
Sbjct: 294 PSIDQLLLPPISCIQNIKDRNINSMPPPAL 323


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 134 NALLLHGRNRQGGGTY*CG 78
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 134 NALLLHGRNRQGGGTY*CG 78
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,059,729
Number of Sequences: 27780
Number of extensions: 149676
Number of successful extensions: 307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)