Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k08r
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.5  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 254 PEVKWLLDPIDIYN 213
           PE+ WL D I++Y+
Sbjct: 52  PEITWLKDGIELYH 65


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 240 PLNLRWAVNMSHPL 281
           PLN+ W+    HP+
Sbjct: 59  PLNIDWSTADGHPV 72


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 240 PLNLRWAVNMSHPL 281
           PLN+ W+    HP+
Sbjct: 59  PLNIDWSTADGHPV 72


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 289 KKRTRQTHTHY 321
           +KR RQT+T Y
Sbjct: 8   RKRGRQTYTRY 18


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 289 KKRTRQTHTHY 321
           +KR RQT+T Y
Sbjct: 270 RKRGRQTYTRY 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,988
Number of Sequences: 438
Number of extensions: 1664
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)