Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k08f
         (397 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   1.5  
UniRef50_Q24GB2 Cluster: Putative uncharacterized protein; n=3; ...    32   3.5  
UniRef50_Q1AXC5 Cluster: Putative uncharacterized protein precur...    31   8.1  
UniRef50_Q9S7Z2 Cluster: F1C9.7 protein; n=1; Arabidopsis thalia...    31   8.1  
UniRef50_A0BT03 Cluster: Chromosome undetermined scaffold_126, w...    31   8.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 237 ARWWYLLVRTHKRSCHQ 287
           A WWYL  RTHKRS H+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q24GB2 Cluster: Putative uncharacterized protein; n=3;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1151

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 389  LNSNNSIYEYNVHLFITVKVHDYICIFLVDPSFLL 285
            L S N IY  NV LFI + ++  + I L+D  F L
Sbjct: 1096 LTSQNIIYSINVKLFIQILINQLLFILLIDGRFQL 1130


>UniRef50_Q1AXC5 Cluster: Putative uncharacterized protein
           precursor; n=1; Rubrobacter xylanophilus DSM 9941|Rep:
           Putative uncharacterized protein precursor - Rubrobacter
           xylanophilus (strain DSM 9941 / NBRC 16129)
          Length = 109

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 15  VGIVCMCLSGAFFIALMGGSCSR 83
           VG+ C CLSGA + A+ GG  SR
Sbjct: 63  VGLACFCLSGAAYAAVGGGRRSR 85


>UniRef50_Q9S7Z2 Cluster: F1C9.7 protein; n=1; Arabidopsis
           thaliana|Rep: F1C9.7 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 319

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 6   KEYVGIVCMC----LSGAFFIALMGGSCSRPT*G*VVIGPHRHL 125
           KE V IVC+C    LS A F+   GG+ S    G V+I P RH+
Sbjct: 267 KEEVKIVCVCHGSFLSPAEFVRHGGGTVSDDDGGDVMINPLRHI 310


>UniRef50_A0BT03 Cluster: Chromosome undetermined scaffold_126,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_126,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 173

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 241 LAYFCHEAVMHFGLKCGSAVLTTQTLELMSQGV 143
           LA +CHE + +   +   A++ TQ L+++ QGV
Sbjct: 114 LAAWCHETIRNTNKRVSRAMIQTQALKMIKQGV 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,585,776
Number of Sequences: 1657284
Number of extensions: 7143074
Number of successful extensions: 12647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12644
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)