Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k08f
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.1  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    24   7.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.8  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 203 FEVRVSRFNYTDLRTHVSRCIIAFT 129
           FE + S  NY DL +H S C+  FT
Sbjct: 164 FECKFSDENYKDLISHASDCMKEFT 188


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 102 PLNLRWAVNMSHPLMQ*KTHQTD 34
           P NL W+V++  PL+  KT +++
Sbjct: 49  PKNLDWSVSVQMPLVTSKTKESE 71


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 291 FTDDRTSCESALVGTTTLPIS 229
           F D++ S E  L+GT  LP++
Sbjct: 441 FLDEKVSAELLLLGTLQLPLA 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,841
Number of Sequences: 5004
Number of extensions: 30703
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)