Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k08f
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)                     27   4.2  
SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)                       26   9.6  

>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
          Length = 391

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 29  YVSVWCVFYCINGWLMFT 82
           YV  W VF C++ W +FT
Sbjct: 56  YVDRWSVFTCVDRWSVFT 73



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 20  YSVYVSV--WCVFYCINGWLMFT 82
           YSV++ V  W +F C++ W +FT
Sbjct: 78  YSVFICVDRWSLFTCVDRWSVFT 100



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 32  VSVWCVFYCINGWLMFT 82
           V  W VF C++ WL+FT
Sbjct: 199 VDRWSVFTCVDRWLVFT 215



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 20  YSVYVSV--WCVFYCINGWLMFTAHLRLS 100
           +SV+  V  W VF C++ W +FT   R S
Sbjct: 238 WSVFTCVHRWSVFTCVDRWSVFTCEDRWS 266



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 20  YSVYVSV--WCVFYCINGWLMFT 82
           +SV+  V  W VF C++ W +FT
Sbjct: 301 WSVFTCVDRWSVFICVDRWSLFT 323



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 20  YSVYVSV--WCVFYCINGWLMFT 82
           +SV+  V  W VF C++ W +FT
Sbjct: 346 WSVFTCVDSWSVFICVDRWSLFT 368


>SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)
          Length = 464

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 256 SRYHHLAYFCHEAVMHFGLKCGSAVLTTQT 167
           +RYH   Y C    M    KC  A + T+T
Sbjct: 215 ARYHGHQYKCSRVTMATKAKCSRATMATKT 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,492
Number of Sequences: 59808
Number of extensions: 243083
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)