Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04r
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   5.2  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   5.2  

>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 544 FSIRVSEYKSSLFCLTNVGRYYISSGRDIAHLP 446
           FS++ S  + S++C   + R++I S  ++AH P
Sbjct: 169 FSVQSSFSQDSVYCHELIARFHIISLHELAHTP 201


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 550 VFFSIRVSEYKS-SLFCLTNVGRYYISSGRD-IAHLPVLLKIAIYYS 416
           +F  + ++E+   SL CL+ + R+Y+S+  D I  +P   K A++ S
Sbjct: 40  LFVDLPITEWLGGSLSCLSGLRRFYLSTYEDPILLIPAPWKTALFSS 86


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 515  GFIFAHPDREKNGVPSPKQGILT 583
            G++    D++   VP+P QGILT
Sbjct: 1362 GYVSTAMDKQGRSVPAPGQGILT 1384


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 SFNSITS*HNNETKKPSPAITLPRQS 193
           ++NS TS ++N T  P P IT  + S
Sbjct: 175 TYNSTTSSYHNSTSTPPPTITSTKAS 200


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 152 TKKPSPAITLPRQSRQCTPQRSMDVSNALPIYEH 253
           TKKP P IT+  + +      S D+S    + EH
Sbjct: 366 TKKPEPCITVKEEEQLAPKIESADLSITPQVTEH 399


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 722 GSSDYKWLSELIDISMTTLEA 660
           G++D  WL+ ++D  +TTL+A
Sbjct: 419 GAADNNWLNNVVDSILTTLKA 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,546
Number of Sequences: 5004
Number of extensions: 61906
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)