Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04r
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672...    29   4.1  
05_06_0242 + 26638401-26638781                                         28   7.2  
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571...    28   9.5  

>12_02_0579 +
           20764626-20765123,20765135-20766064,20767181-20767275,
           20767342-20767384,20767869-20768231
          Length = 642

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 420 IQYNVRNSWICILLSNEPALSRLHIVRNISYLFST 316
           I ++ R S + +LL N PAL ++ +  + SY+F T
Sbjct: 558 IPFDDRKSLLRLLLKNAPALEKITVKFDPSYIFET 592


>05_06_0242 + 26638401-26638781
          Length = 126

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 399 SWICILLSNEPALSRLHI 346
           +WIC L+   P+L RLH+
Sbjct: 42  TWICALVEEAPSLERLHV 59


>01_01_0733 -
           5715719-5715785,5715908-5715966,5717844-5717884,
           5718086-5718134,5718427-5718559,5719303-5719384,
           5719990-5720472,5720612-5721024,5721260-5721419,
           5721541-5721665,5721756-5721811,5721831-5721889,
           5722069-5722180,5722952-5723032
          Length = 639

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 FTNIIVPHILRYI*KVYNTNNASVTWRIDKR 335
           F+  IVPH++R+     NT N  +T+ + +R
Sbjct: 608 FSCRIVPHVIRFTNIKINTENGKITYIVKRR 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,708
Number of Sequences: 37544
Number of extensions: 345997
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)