Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04r
         (770 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   1.5  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   2.6  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   3.4  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 412 ILNNILRFLTKQVSVLYLCPMRYSTY 489
           + NN+L+F T+  ++LY   +  STY
Sbjct: 290 VYNNLLKFYTESGNLLYTAKIPNSTY 315


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 676 IEMSISSDSHL*SDEPRTCTQRTNKN*VNLY 768
           IE    +D+H+   EP   T +TN   V+LY
Sbjct: 653 IEFLFLNDNHIVHVEPHCFTHKTNLTRVDLY 683


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 447 GKCAISLPDEI*YLPTFVRQNKLD-LYSLTLIEKKTVYRHQNKVY*QPLAL 596
           G   + +P E  +LP  V  N  D  Y +T++  K +  H  KV  +P A+
Sbjct: 94  GVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM-TKAILHHTGKVVWKPPAI 143


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,834
Number of Sequences: 2352
Number of extensions: 15956
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)