Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04r
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 447 GKCAISLPDEI*YLPTFVRQNKLD-LYSLTLIEKKTVYRHQNKVY*QPLAL 596
           G   + +P E  +LP  V  N  D  Y +T++  K +  H  KV  +P A+
Sbjct: 91  GVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM-TKAILHHTGKVVWKPPAI 140


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 326 YSPRNTGVIGVINFS 282
           Y P+N GVIG  N S
Sbjct: 466 YIPQNLGVIGTSNLS 480


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 451 SVLYLCPMRYSTYLHLLDKINW 516
           S+L LC +    Y+H+ D + +
Sbjct: 112 SILNLCAISLDRYIHIKDPLRY 133


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 401 ILGFVFYCLMSLLYPGCILSEISLIYSPR 315
           +LG  F C+M ++    +L+ + LI+  R
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 401 ILGFVFYCLMSLLYPGCILSEISLIYSPR 315
           +LG  F C+M ++    +L+ + LI+  R
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 401 ILGFVFYCLMSLLYPGCILSEISLIYSPR 315
           +LG  F C+M ++    +L+ + LI+  R
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 516 DLYSLTLIEKKTVYRHQNKVY*QPL 590
           D+   TL  K T+ RH+ + + QPL
Sbjct: 375 DVCGKTLSTKLTLKRHKEQQHFQPL 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,580
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)