Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04f
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   4.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.9  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 236 RRASVNAIPKNVNCNKRAEVGAAEPLSVAVQTDSAELCRLSGC 364
           R   V+  P   N N+  +     PLS   +T   ELC+ + C
Sbjct: 13  RSPLVDQNPSIQNINEEVKRDIQNPLSYKTETSDKELCQTAAC 55


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 390 SSLSASVS*HPESRHSSALSVCTATDNGSAAPTS 289
           SSLS+S S    S  SS+ S+ +++ + S++PTS
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTS 285


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 12  PGTPCSASASTSVGGTRSGRYASSSTGN 95
           PG+  + + S+S+ GT   + A+S+TG+
Sbjct: 237 PGSNTTVTPSSSITGTNDSKPAASNTGS 264


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 509 QHRTPSILDADAIQLRNAQAE 571
           QH TPS  D   +QL+N Q +
Sbjct: 222 QHNTPSPFDTIDLQLKNEQVQ 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,905
Number of Sequences: 5004
Number of extensions: 16553
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)