Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04f
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    28   4.6  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    28   6.1  
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591...    28   6.1  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    28   6.1  

>07_03_0860 +
           22057309-22058453,22059833-22059964,22060328-22060412,
           22061666-22061867,22062273-22062344,22062509-22062573,
           22062682-22062741,22063033-22064379,22064463-22064607,
           22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 227 SPKRRASVNAIPKNVNCNKRAEVGAAE 307
           SP  R S N I    NCNK   +GAAE
Sbjct: 305 SPNERLSENIIQLPSNCNKYFTLGAAE 331


>10_06_0002 +
           9382559-9382937,9383008-9383180,9386752-9386901,
           9387180-9387325,9387416-9387572,9387720-9387778,
           9388204-9388360,9389001-9389150,9389280-9389416,
           9390071-9390217,9390292-9390393,9390742-9390799,
           9391997-9392034,9392124-9392250,9392320-9392493,
           9393125-9393256,9393940-9394049,9394752-9394812,
           9395036-9395213,9395326-9395531,9395796-9395915,
           9396496-9396594,9396983-9397204,9397482-9397621,
           9397741-9397852,9398021-9398071,9398151-9398240,
           9398397-9398567,9398663-9398815,9399774-9399950,
           9400045-9400182,9400295-9400365,9400739-9400838,
           9401324-9401380,9401469-9401525,9401619-9401699,
           9401782-9401864,9401975-9402110
          Length = 1632

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 EKRSQRASGKGTP*ARGERQS-ARRERKTATRDREGEQP 231
           E RSQ A+    P A GERQ+   RE   A   R GE P
Sbjct: 46  EGRSQEAAWPVAPWACGERQAGGTRESAAAGEPRAGEGP 84


>08_02_1431 +
           27057706-27057900,27058701-27058815,27059123-27059170,
           27059272-27059524,27059689-27059776,27059883-27059948,
           27060335-27060403,27060492-27060597,27060639-27060793,
           27061208-27061537
          Length = 474

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 61  APEDTPAAVPGISR*ASQKEKRSQRASGKGTP*ARGE-RQSARRERK 198
           APED P+A  G       K K+S    G G    RG+  Q  +R+RK
Sbjct: 6   APEDAPSAAKGAK--GEAKRKQSNWRGGGGGGGGRGDGGQGQKRKRK 50


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 49  SEEHAPEDTPAAVPGISR*ASQKEKRSQRASGKGTP*ARGERQ-SARRERKTATRDREGE 225
           S+  +  DT ++       +S   +R ++   K     RG+R+   RRERK   RDR+ +
Sbjct: 248 SDSDSESDTCSSDSSDLSSSSDDRRRRRKRHSKKDKHKRGKRKRDRRRERKRRKRDRKSK 307

Query: 226 Q 228
           Q
Sbjct: 308 Q 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,111
Number of Sequences: 37544
Number of extensions: 145361
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)