Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04f
         (574 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99721-1|CAA68061.1|  219|Homo sapiens transcription factor TFE3...    34   0.41 
X96717-1|CAA65478.1|  575|Homo sapiens transcription factor TFE3...    34   0.41 
BX572102-1|CAI95779.1|  575|Homo sapiens transcription factor bi...    34   0.41 
BC026027-1|AAH26027.1|  575|Homo sapiens transcription factor bi...    34   0.41 
AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein.     31   3.8  
L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interact...    30   5.0  
AY043282-1|AAK85736.1|   99|Homo sapiens TRIP7-like protein prot...    30   5.0  
AL355796-2|CAH74095.1|   99|Homo sapiens high mobility group nuc...    30   5.0  
AF274949-1|AAK07526.1|   99|Homo sapiens PNAS-24 protein.              30   5.0  

>X99721-1|CAA68061.1|  219|Homo sapiens transcription factor TFE3
           protein.
          Length = 219

 Score = 33.9 bits (74), Expect = 0.41
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   RGTPGTPCSASASTSVGGTRSGRYASSSTGNI 98
           + TP TP + SAS+S GG+R+   +SSS+  +
Sbjct: 83  QATPATPATLSASSSAGGSRTPAMSSSSSSRV 114


>X96717-1|CAA65478.1|  575|Homo sapiens transcription factor TFE3
           protein.
          Length = 575

 Score = 33.9 bits (74), Expect = 0.41
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   RGTPGTPCSASASTSVGGTRSGRYASSSTGNI 98
           + TP TP + SAS+S GG+R+   +SSS+  +
Sbjct: 83  QATPATPATLSASSSAGGSRTPAMSSSSSSRV 114


>BX572102-1|CAI95779.1|  575|Homo sapiens transcription factor
           binding to IGHM enhancer 3 protein.
          Length = 575

 Score = 33.9 bits (74), Expect = 0.41
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   RGTPGTPCSASASTSVGGTRSGRYASSSTGNI 98
           + TP TP + SAS+S GG+R+   +SSS+  +
Sbjct: 83  QATPATPATLSASSSAGGSRTPAMSSSSSSRV 114


>BC026027-1|AAH26027.1|  575|Homo sapiens transcription factor
           binding to IGHM enhancer 3 protein.
          Length = 575

 Score = 33.9 bits (74), Expect = 0.41
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   RGTPGTPCSASASTSVGGTRSGRYASSSTGNI 98
           + TP TP + SAS+S GG+R+   +SSS+  +
Sbjct: 83  QATPATPATLSASSSAGGSRTPAMSSSSSSRV 114


>AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein.
          Length = 4464

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 61  APEDTPAAVPGISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDREGEQP 231
           AP+D  A  PG +   S K ++ QR SG+G+  A     S R  R       +G  P
Sbjct: 23  APQDFKAIDPGFACTMSSKAEKKQRLSGRGSSQA---SWSGRATRAAVATQEQGNAP 76


>L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interactor
           protein.
          Length = 120

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 55  EHAPEDTPAAV-PG--ISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDREGE 225
           E  P  T A   PG  ISR A  K++  Q A  +GT  +      A   +KT + D EGE
Sbjct: 61  EPKPRKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE 120


>AY043282-1|AAK85736.1|   99|Homo sapiens TRIP7-like protein
           protein.
          Length = 99

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 55  EHAPEDTPAAV-PG--ISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDREGE 225
           E  P  T A   PG  ISR A  K++  Q A  +GT  +      A   +KT + D EGE
Sbjct: 40  EPKPRKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE 99


>AL355796-2|CAH74095.1|   99|Homo sapiens high mobility group
           nucleosomal binding domain 3 protein.
          Length = 99

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 55  EHAPEDTPAAV-PG--ISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDREGE 225
           E  P  T A   PG  ISR A  K++  Q A  +GT  +      A   +KT + D EGE
Sbjct: 40  EPKPRKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE 99


>AF274949-1|AAK07526.1|   99|Homo sapiens PNAS-24 protein.
          Length = 99

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 55  EHAPEDTPAAV-PG--ISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDREGE 225
           E  P  T A   PG  ISR A  K++  Q A  +GT  +      A   +KT + D EGE
Sbjct: 40  EPKPRKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,659,947
Number of Sequences: 237096
Number of extensions: 742969
Number of successful extensions: 2745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)