Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k04f
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical p...    29   2.3  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    29   3.1  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    29   3.1  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    29   3.1  

>Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 ASQKEKRSQRASG-KGTP*ARGERQSARRERKTATRDREGEQP 231
           A Q++ R  RA+G KGT    G    A  E+ T   D+E ++P
Sbjct: 101 ADQEQHRGSRAAGEKGTQHFDGRNTRAAGEKGTQQADQESQRP 143



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 ASQKEKRSQRASG-KGTP*ARGERQSARRERKTATRDREGEQP 231
           A Q++ R  R++G KGT    G    A  E+ T   D+E ++P
Sbjct: 176 ADQEQHRGSRSAGQKGTQHFDGRNTRAAGEKGTQQADQESQRP 218


>Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 ASQKEKRSQRASG-KGTP*ARGERQSARRERKTATRDREGEQP 231
           A Q++ R  RA+G KGT    G    A  E+ T   D+E ++P
Sbjct: 101 ADQEQHRGSRAAGEKGTQHFDGRNTRAAGEKGTQQADQESQRP 143



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 ASQKEKRSQRASG-KGTP*ARGERQSARRERKTATRDREGEQP 231
           A Q++ R  R++G KGT    G    A  E+ T   D+E ++P
Sbjct: 176 ADQEQHRGSRSAGQKGTQHFDGRNTRAAGEKGTQQADQESQRP 218


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 64  PEDTPAAVPGISR*ASQKEKRSQR 135
           P+DTPA +P +++  +++EKR Q+
Sbjct: 52  PKDTPAKIPVVTKAEAKEEKRRQK 75


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 64  PEDTPAAVPGISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDR 216
           P D P  +P I     +K+ R+  +S    P + G   +A R ++TAT  R
Sbjct: 341 PPDIPPPLPPIEH-VPRKKSRNASSSPTRKPKSAGVENAAARRKRTATTTR 390


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 64  PEDTPAAVPGISR*ASQKEKRSQRASGKGTP*ARGERQSARRERKTATRDR 216
           P D P  +P I     +K+ R+  +S    P + G   +A R ++TAT  R
Sbjct: 365 PPDIPPPLPPIEH-VPRKKSRNASSSPTRKPKSAGVENAAARRKRTATTTR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,803
Number of Sequences: 27780
Number of extensions: 108988
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)