Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k03f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.2  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   2.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.2  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   5.0  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   8.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.8  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -2

Query: 326 YFFPQANKHQFSISFYKLSYEHIFFTRHINL*SFIRLRIPANCFVFEEVLVWGATSFTVH 147
           YF    N    S + Y  + E +   +H    +      P   F F+ + +W AT F+  
Sbjct: 114 YFNENDNAFLISTNAYSAAQERLHIWKHEYQEALSLHPSPTERFTFD-LYIWSATVFSSR 172

Query: 146 CFHKEM 129
           CF   +
Sbjct: 173 CFSSNL 178


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 389 QVETTLTNCHVVNTKTNIQWPYFFPQANKHQFSISFY 279
           Q+ TT+ +  VV T+  I +P        H+F ISF+
Sbjct: 450 QLFTTMAHILVVTTRERINFPELNEWITLHRFVISFF 486


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
 Frame = +3

Query: 171 PDQYLLKNETVCWDSQTNETSQ-INMPCKKYV--FIRKFI--ERDGKLVL-----ISLGK 320
           PD +   +ET+C  SQ + +SQ I   C  ++     +F+    DGKL        S  K
Sbjct: 322 PDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLVGAEDGKLQRGYRSDYSETK 381

Query: 321 EIGPLNVSFCINDVAVGQSRLNLSIIQNV 407
            + P NVS+  ++V +    +  S  QNV
Sbjct: 382 AVQPSNVSYEGHNVFISGIDVMTSNSQNV 410


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 389 QVETTLTNC-HVVNTKTNIQWPYFFPQANKHQFSISFYKLSYEHIFFTR 246
           Q++  L  C ++ N  TN +  YF   A+ H F+++ YK S ++  F++
Sbjct: 113 QLKLILLLCQNLPNVTTNAK-KYFSSLADGHNFTLTLYKFSLDNQTFSQ 160


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 334 SGPISFPKLIST-NFPSLSINFLMNTY 257
           SG  SF K+I+   FPS  INF+ + Y
Sbjct: 91  SGGKSFAKVINCLRFPSFLINFIFSVY 117


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 211 SQQTVSFLRRYWSG 170
           S+Q  SFL++YW G
Sbjct: 293 SEQNTSFLQKYWKG 306


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 505 YMATVIARKITDTIIQYPKTVSFGSISVAHVTATFWII 392
           ++ T +   ++  I+QY   + +    V ++T+TFWII
Sbjct: 292 HLGTALGPSLSGFIVQYTPHMYY----VFYITSTFWII 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,086
Number of Sequences: 5004
Number of extensions: 54101
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)