Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k03f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916...    30   1.7  
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    28   6.8  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    28   6.8  
04_01_0499 + 6529624-6530304,6530941-6531105                           27   9.0  

>02_05_0998 +
           33391021-33391266,33391354-33391502,33391600-33391681,
           33391808-33392223,33393659-33393854,33393932-33394074,
           33394153-33394327,33394450-33394503,33394701-33394877,
           33395832-33395944,33396083-33396265,33396570-33396632,
           33396742-33396894,33396922-33396994,33397076-33397206,
           33397285-33397420,33397504-33397581,33398146-33398262,
           33398473-33398535,33398619-33398720
          Length = 949

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -2

Query: 326 YFFPQANKHQFSISFYKLSYEHIFFTR-HINL*SFI----RLRIPANCFVFEEVLVWGAT 162
           Y   +  +H  +IS Y   YE +FF R H++  S +     L  P    VF++ ++   +
Sbjct: 280 YDLAENARHIRTISLYDWGYELLFFPRYHLDYSSLLYRKSLLGRPIVMDVFQDYILVTYS 339

Query: 161 SFTVHCFH 138
            F VH FH
Sbjct: 340 PFDVHIFH 347


>02_02_0492 -
           10907529-10907629,10907714-10907953,10908035-10908098,
           10908416-10908721,10909347-10909561,10909656-10909950,
           10910493-10910597,10911112-10911180,10911433-10911519,
           10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 VLTTWQLVKVVSTCQ*SKTLPSHVQP 426
           VLTTW+L+   + C   +T+ S+V P
Sbjct: 219 VLTTWKLILFTAVCALLRTVSSYVGP 244


>02_02_0490 -
           10879761-10879861,10879946-10880185,10880274-10880337,
           10880426-10880731,10881098-10881312,10881417-10881711,
           10882193-10882357,10882477-10882527,10882657-10883109,
           10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 VLTTWQLVKVVSTCQ*SKTLPSHVQP 426
           VLTTW+L+   + C   +T+ S+V P
Sbjct: 60  VLTTWKLILFTAVCALLRTVSSYVGP 85


>04_01_0499 + 6529624-6530304,6530941-6531105
          Length = 281

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 168 PPDQYLLKNETVCWDSQTNETSQINMPCKKYVFIRKFIERDGKLVLIS 311
           P D  LLK+   CWD+  ++  +I   CKK + +R      GK++LI+
Sbjct: 220 PADAVLLKHVLHCWDA--DDCVKIVGQCKKAIPVR---GDGGKVILIN 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,796
Number of Sequences: 37544
Number of extensions: 310265
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)