Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k03f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z99771-1|CAB16919.2|  910|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z66511-8|CAA91319.2|  910|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical
           protein F56A3.1 protein.
          Length = 783

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = -3

Query: 256 FLQGILICEVSFVCE-SQQTVSFLRRYWSGGQHLLLFTASIKKCKNK*PRTLFN*IKFI 83
           F  G+ + E++F+   S+ ++   RR+  GG HLL+    ++K +N+  R L +  KF+
Sbjct: 541 FSDGLPLSELTFIASISRDSLFNFRRF--GGAHLLIINDPLEKLRNEDGRLLVDDGKFV 597


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
            R09H10.5 protein.
          Length = 1603

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 135  FMEAVNSKRCCPPDQYLLKNETVCWDSQTNETSQINMPCKKYVFIRKFIERDGKLVLISL 314
            F+  +N+K    P+ YLLKN     DS    T  +N+P K+Y  +  F + + K+V  S 
Sbjct: 1153 FVVEINTKNMILPNSYLLKNIQAFVDS----TDDVNVP-KQYTLV-TFDDTNIKVVASST 1206

Query: 315  GKEI 326
             K++
Sbjct: 1207 RKDV 1210


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 344 TNIQWPYFFPQANKHQFSISFYKLSYEHIFFTRHINL 234
           TN     FFPQ N+ + SI+FY  +Y  IF T +  L
Sbjct: 119 TNFTSLSFFPQLNRPETSINFYCYTY-GIFITNNSQL 154


>Z99771-1|CAB16919.2|  910|Caenorhabditis elegans Hypothetical
           protein D1043.1 protein.
          Length = 910

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 511 LLYMATVIARKITDTIIQYPKTVSFGSISVAHVTATFWIIDKLRRL 374
           L+ +  V+ ++ ++TIIQ P   +  + S+       WII+K+R L
Sbjct: 676 LVAVRVVLKKQSSETIIQIPPLTTARTCSLFQRERLQWIIEKIRLL 721


>Z66511-8|CAA91319.2|  910|Caenorhabditis elegans Hypothetical
           protein D1043.1 protein.
          Length = 910

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 511 LLYMATVIARKITDTIIQYPKTVSFGSISVAHVTATFWIIDKLRRL 374
           L+ +  V+ ++ ++TIIQ P   +  + S+       WII+K+R L
Sbjct: 676 LVAVRVVLKKQSSETIIQIPPLTTARTCSLFQRERLQWIIEKIRLL 721


>U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical
           protein B0507.10 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 356 RRGSWSKSSQLVNNPKRCRH-MCNRNRSERN 445
           RR   + S++++ N ++ R  MCN+ R ERN
Sbjct: 118 RRQQLNDSAEIIKNGEKIRQEMCNKIREERN 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,603
Number of Sequences: 27780
Number of extensions: 308189
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)