Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k03f
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = -3

Query: 280 INFLMNTYFLQGILICEVSFVCESQQTVSFLRRYWSGGQHLLLFTASIKKCKNK*PRTLF 101
           + F M  Y++  ILI  +S+V       +   R   G   +L F     K +N  P+  +
Sbjct: 231 MGFFMMDYYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTFMTLASKVENSLPKVSY 290

Query: 100 N*IKFIFCLCYIVFV*AS 47
                I+ L   +F+ A+
Sbjct: 291 IKASEIWFLGCTIFLFAA 308


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 473 GHNHTISKNSFFRIYFGCTCD 411
           GH+ T S +SFF    GC  D
Sbjct: 349 GHDTTASGSSFFLAVMGCHPD 369


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 278 YRKRWKIGAY*LGERNRATEC*FLY*RRGSWSKSSQLVNNPKRCRHMCNRNRSERNCFWI 457
           YR+ WK  +    ER R+ E   +       S S++ ++N    ++  N N    NC  +
Sbjct: 59  YRETWKERSRDRTERERSREPKIIS------SLSNRTIHNNNNYKYNYNNNNYNNNCKKL 112

Query: 458 LYD 466
            Y+
Sbjct: 113 YYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 278 YRKRWKIGAY*LGERNRATEC*FLY*RRGSWSKSSQLVNNPKRCRHMCNRNRSERNCFWI 457
           YR+ WK  +    ER R+ E   +       S S++ ++N    ++  N N    NC  +
Sbjct: 59  YRETWKERSRDRTERERSREPKIIS------SLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112

Query: 458 LYD 466
            Y+
Sbjct: 113 YYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 278 YRKRWKIGAY*LGERNRATEC*FLY*RRGSWSKSSQLVNNPKRCRHMCNRNRSERNCFWI 457
           YR+ WK  +    ER R+ E   +       S S++ ++N    ++  N N    NC  +
Sbjct: 59  YRETWKERSRDRTERERSREPKIIS------SLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112

Query: 458 LYD 466
            Y+
Sbjct: 113 YYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 278 YRKRWKIGAY*LGERNRATEC*FLY*RRGSWSKSSQLVNNPKRCRHMCNRNRSERNCFWI 457
           YR+ WK  +    ER R+ E   +       S S++ ++N    ++  N N    NC  +
Sbjct: 59  YRETWKERSRDRTERERSREPKIIS------SLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112

Query: 458 LYD 466
            Y+
Sbjct: 113 YYN 115


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 503 YGNRYCQKNNGHNHTISKNSFFRI 432
           Y N Y   NN +N    K  ++ I
Sbjct: 94  YNNNYNNYNNNYNTNYKKLQYYNI 117


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 NMPCKKYVFIRKFIERDGKL 299
           N P  KY +IR+ + ++ ++
Sbjct: 315 NFPIYKYKYIREIMNKESRI 334


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 NMPCKKYVFIRKFIERDGKL 299
           N P  KY +IR+ + ++ ++
Sbjct: 315 NFPIYKYKYIREIMNKESRI 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,645
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)