Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k02r
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935...    30   2.1  
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    29   3.6  

>11_04_0470 -
           18092681-18092695,18092725-18092811,18093528-18093593,
           18093696-18093740,18093850-18093903,18093987-18094082,
           18094161-18094241,18095634-18095714,18095798-18095884,
           18095976-18096074,18096644-18096769,18098162-18098248,
           18098321-18098389,18098711-18098806,18099053-18099169,
           18099710-18099790,18099873-18100010,18100307-18100580,
           18100735-18100830,18101612-18101757,18102883-18103141,
           18103434-18103537,18103623-18103748,18103872-18103982,
           18104200-18104304
          Length = 881

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 392 DVQQNERRR*IDSVRL*NMSAISRAVSLGG*FEKLMTMFPF 270
           DVQQN+ R+ ++ +RL   + I  ++S+ G F  L+ +  F
Sbjct: 267 DVQQNKTRKLLEEIRLSGYNIIGLSLSIQGAFSDLLDISSF 307


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 505 RCPKTHSETDNISSDRXQKLILESRYIDLEPCKSTRRETFSKTNVAGKLTPCV 347
           RC    +E DN  SD   +++ +S  ++L  C  T     S+  +AG+  PCV
Sbjct: 391 RCVGGGTEADNADSDSDIEVVADSVSVNLR-CPMTG----SRIKIAGRFKPCV 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,101
Number of Sequences: 37544
Number of extensions: 220986
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)