Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k02r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.93 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.7  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 SVSKFVILXHFDYNNNKFLLMNLNGNIVINFSNY 303
           S+S   I  + +YNNN +   N N N   N++NY
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYNNN---NYNNY 114


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 277 SRLDSSKEICCCCNQNVLGSRI*IHFNVFVLP 182
           S ++ S+ I C   QNV G RI   F    LP
Sbjct: 238 SNINISQVIACVGQQNVEGKRIPFGFRKRTLP 269


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 ILXHFDYNNNKFLLMNLNGNIVINFSN 300
           I+  FDYNN    + ++ G  +I ++N
Sbjct: 189 IVQSFDYNNTWVYIADVEGYALIIYNN 215


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  HFTEQHNNLLHYNLIFNINRLRTRFKINIID 123
           ++   +NN  +YN  +N N  +  + IN I+
Sbjct: 329 NYNNNYNNYNNYNNNYNNNYKKLYYNINYIE 359


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 232 FDYNNNKFLLMNLNGNIVINFSN 300
           ++YNNN +   N N  +  N  N
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 232 FDYNNNKFLLMNLNGNIVINFSN 300
           ++YNNN +   N N  +  N  N
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIIN 118


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 137 ITDYSAFYILILYNLGQDKYVKV 205
           + +YS+  I+ L+N+    YVK+
Sbjct: 275 VPEYSSSIIMELHNIEGTHYVKI 297


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 137 ITDYSAFYILILYNLGQDKYVKV 205
           + +YS+  I+ L+N+    YVK+
Sbjct: 290 VPEYSSSIIMELHNIEGTHYVKI 312


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 HFDYNNNKFLLMNLNGNIVINFSNY 303
           +++YNNN +     N N  + + NY
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYKNY 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,346
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)