Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k02f
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   1.8  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   4.2  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   5.5  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   7.3  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   9.6  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   9.6  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 514 CLIKLVENLNEFNNEICNIIL 576
           C++ L+ENL   +N IC+II+
Sbjct: 218 CVLSLMENLLSVDNSICSIIV 238


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +2

Query: 524 NWLKI*MNLIMKYVTLYYAHYLM 592
           +WL I +NL++ +VT+YY +YL+
Sbjct: 167 SWLIIEINLLV-HVTMYYYYYLV 188


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 335 FTVSTQIQDFIPIMSVKNRSYQYAENHRINS*NRNTEGKKV 457
           F  S+ +Q    + S+K +S+QY +++  N  ++  + +K+
Sbjct: 17  FIASSPVQSVSEMKSIKQKSFQYFDDYEKNVSDKTIQFQKL 57


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 328 LIYLNKILHIISRPIKTHN 272
           LIYL  +LHII R +K  N
Sbjct: 173 LIYLYNVLHIIHRDLKPSN 191


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 490 IKFVNTYCCLIKLVENLNEFNNEICNIILCTLPYAKCFIA 609
           I  +++Y   ++ VEN+    N++ N  + TLP     I+
Sbjct: 283 ILLIDSYTPHLRAVENIRNSGNDLRNTTVITLPSTSASIS 322


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 584 NVHNIMLHISLLN----SFKFSTSFIKQQYVFTNLIGEYMY 474
           ++H +M+  S L     S++F   F    Y F N  GE+ Y
Sbjct: 177 SIHQVMILFSDLGGTPYSYRFMDGFSSHTYKFVNDKGEFYY 217


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 457 YFLTLCISISTVNSMIFGIL 398
           YFL++C S+S V S+I G+L
Sbjct: 187 YFLSICFSVSVVVSLI-GLL 205


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +1

Query: 550 NNEICNII-----LCTLP-YAKCFIAIAFIRINHFSIYGILD 657
           N ++CN+       CT   + KCF+A   +   H  I G++D
Sbjct: 446 NADLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDIAGVMD 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,174
Number of Sequences: 5004
Number of extensions: 47818
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)