Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k02f
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -1

Query: 481 ICTFLIIRYFLTLCISISTVNSMIFGILIASIFH*HYRNEILYLSTDSKYLLIYLNKILH 302
           +C+FL+I ++  +   I+ ++ ++   + A +   +    IL   + S  LL++ N + +
Sbjct: 62  LCSFLLIDFYTFVPSKITRIDGLLIDFIDAKVL--YTSMYILSALSTSSCLLLFCNSVFN 119

Query: 301 IIS--RPIKTHNRNKSAWFS 248
           I +  R  K+  R  S W +
Sbjct: 120 IFNMLRNNKSWLRTFSEWLA 139


>Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical
           protein F57G9.4 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 459 LIIKKVHIFTY*ICKYILLLN 521
           L++  V +F+Y IC YIL LN
Sbjct: 25  LVLSIVELFSYLICAYILTLN 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,713
Number of Sequences: 27780
Number of extensions: 250763
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)