Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01r
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O74539 Cluster: Peroxide stress-activated histidine kin...    35   2.3  
UniRef50_UPI00015C4819 Cluster: nitrate transport protein NrtD; ...    33   7.1  
UniRef50_O51822 Cluster: Intergenic sequence protein 2; n=3; Pro...    33   7.1  
UniRef50_Q4DTH8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q8IDP7 Cluster: Putative uncharacterized protein MAL13P...    33   9.4  

>UniRef50_O74539 Cluster: Peroxide stress-activated histidine kinase
            mak3; n=1; Schizosaccharomyces pombe|Rep: Peroxide
            stress-activated histidine kinase mak3 -
            Schizosaccharomyces pombe (Fission yeast)
          Length = 2344

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = -1

Query: 586  LFYMLWSPICLVLSIPDSTKVSDHNSQWK*NL-FVNSILYSEV*CRYGVFVILLYVCFLC 410
            +F   WS +  +L  P+ TK   +  Q+K NL F +S+   +  C   V+ +LL  C L 
Sbjct: 1252 IFMFTWSLVNKMLICPEFTKQKKYYEQYKENLGFFDSLCIGDNECITRVYFLLLKACGL- 1310

Query: 409  NLTNSMCFLCAFEL*SVLPIC----LFLLQ 332
             + N + F  +  L  V+ +     LFLLQ
Sbjct: 1311 -IMNGLNFEASVMLEEVISLTEKLELFLLQ 1339


>UniRef50_UPI00015C4819 Cluster: nitrate transport protein NrtD;
           n=1; Campylobacter concisus 13826|Rep: nitrate transport
           protein NrtD - Campylobacter concisus 13826
          Length = 58

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 501 NEISL*TLFCIQRYDVDMVYLLFYCMCVSCA--ISQIACAFYVHLN 370
           N I++   F     D +++Y+ F C+C+     I  +AC+F+V+LN
Sbjct: 6   NFINIPQFFAYDLGDRNLLYIAFACLCLQLIVDICYLACSFFVNLN 51


>UniRef50_O51822 Cluster: Intergenic sequence protein 2; n=3;
           Proteobacteria|Rep: Intergenic sequence protein 2 -
           Thiocapsa roseopersicina
          Length = 439

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 510 PNGNEISL*TLFCIQRYDVDMVYLLFYCMCVSCAISQIACAFYVHLNYNQFCPFV 346
           P  +E++L       R +VD     F+  CV C I   AC FY+     ++ P +
Sbjct: 17  PKASELTLERGLAAFRAEVDGPVAAFFSSCVHCGICAQACPFYLETGDPKYTPIL 71


>UniRef50_Q4DTH8 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 106

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 457 CRYGVFVILLYVCFLCNLTNSMCFLCAFEL*SVLPICLFLLQISHKKKTVFSPY*IFIF 281
           CR+  F ++    FL  L  S CFL  F     LP+CLFL    H ++ +F  + +  F
Sbjct: 15  CRFFFFFVMFSFLFLFFL--SFCFLSLFP--HFLPLCLFLCVCLHCRRLMFIWFDLIFF 69


>UniRef50_Q8IDP7 Cluster: Putative uncharacterized protein
           MAL13P1.222; n=1; Plasmodium falciparum 3D7|Rep:
           Putative uncharacterized protein MAL13P1.222 -
           Plasmodium falciparum (isolate 3D7)
          Length = 1488

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +3

Query: 339 RNKQMGRTDYNSNAH-------KKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRF 497
           RN  +   DYN N +       K   + V ++ +H+ N   N     +++EY I  T+  
Sbjct: 24  RNDMIRNNDYNINNYIYDVYISKLIFVMVNIYNEHSMNNNNN-----NSNEYIINNTQNM 78

Query: 498 HFHWELWSDTLVESGILNTKQIGDHSI 578
           +    ++S    E GILN K+    S+
Sbjct: 79  YMIKNIYSSNSYEDGILNNKEYNHASL 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,547,140
Number of Sequences: 1657284
Number of extensions: 15539007
Number of successful extensions: 33198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33161
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)