Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k01r
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 35 0.014
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.1
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 4.7
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 4.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 8.3
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 8.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.3
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.3
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 34.7 bits (76), Expect = 0.014
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = -1
Query: 586 LFYMLWSPICLVLSIPDSTKVSDHNSQWK*NL-FVNSILYSEV*CRYGVFVILLYVCFLC 410
+F WS + +L P+ TK + Q+K NL F +S+ + C V+ +LL C L
Sbjct: 1252 IFMFTWSLVNKMLICPEFTKQKKYYEQYKENLGFFDSLCIGDNECITRVYFLLLKACGL- 1310
Query: 409 NLTNSMCFLCAFEL*SVLPIC----LFLLQ 332
+ N + F + L V+ + LFLLQ
Sbjct: 1311 -IMNGLNFEASVMLEEVISLTEKLELFLLQ 1339
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 83 INCIHIVSLMCYTCV-IVFDIKIKYIINLN 169
I CIH+V+ MC+ + I F +I ++I N
Sbjct: 97 IECIHLVNFMCHDSLKINFGPRINFVIGHN 126
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Frame = +3
Query: 219 WDLKLTSKSINEPNH-----RWPFWRKI 287
WDL SI +PNH +WP W+K+
Sbjct: 63 WDLTKALMSI-DPNHPAHPHKWPLWKKL 89
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 5 DSLLLSINRNHSVYHYVKLCFQ*ILQINCIHIVS 106
D LS +R Y+ + L F+ L+++C+H+ +
Sbjct: 176 DRAPLSTSRKWGAYYIMGLLFKLYLRLDCVHLTN 209
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 47 HYVKLCFQ*ILQINCIHIVSLMCYTCVIVFDIKIKYII 160
++ L F +L + C VSL+C +F ++YI+
Sbjct: 712 YFTTLIFSSLLILACYAFVSLICMDPFFIFTCIVQYIL 749
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 390 HMLFVRLHR-KHTYNKITNTPYLHHTSEYKIEFT 488
HM+ HR K+T +K+T+T ++ S+Y++ T
Sbjct: 992 HMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILT 1025
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 399 FVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRFHFHWELWSDTLVESGIL 548
F + + H+ NKI T +H S ++ + + +LW+D + +L
Sbjct: 992 FEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNYEKLWADVGFRNAVL 1041
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 318 FLCEICNRNKQMGRTDYNSN-AHKKHMLFVR---LHRKHTYNKITN-TPYLHHTSEYKIE 482
F CEIC MGR ++ + ++H+ ++ + +N+IT+ L +YK++
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVD 456
Query: 483 FTKR 494
KR
Sbjct: 457 SKKR 460
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 418 FLCNLTNSMCFLCAFEL*SVLPICLFLLQISHKKKTVFS 302
FL N+TN C + +LP+C FL + + TVFS
Sbjct: 1097 FLENITN-WCSESGIKSLELLPVCCFLRFMYYFLPTVFS 1134
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 76 ITDKLYSHCKFNVLHLCDCI 135
+TDKL S+C + LH+ D +
Sbjct: 597 LTDKLISYCYSSALHIVDLL 616
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,554
Number of Sequences: 5004
Number of extensions: 71139
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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