Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01r
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    29   2.8  
02_05_1355 - 35878060-35878257,35879455-35879691,35880089-35880217     29   2.8  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    28   6.5  
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167     28   6.5  

>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 551 Y*TNR*PQHIKQYLRSQV*NGGSRIPRSAHNHNDGHYQYH-CPDQH 685
           Y T R  +H  +Y + Q  N     P     +++G YQYH   D+H
Sbjct: 444 YETERSKRHEHEYYQMQPNNTEPEGPEEGEAYDEGDYQYHQAADEH 489


>02_05_1355 - 35878060-35878257,35879455-35879691,35880089-35880217
          Length = 187

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 683 VGLDSGIGSDRRCGCVLTWESYFRHFTPVNVDIVLY 576
           VGL +    +R  G   +WE+  RH+  ++V +VLY
Sbjct: 104 VGLITRHDCERTSGYATSWENSIRHYGRLHVSMVLY 139


>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 342 NKQMGRTDYNSNAHKKHMLFVRLHRKHTYNKITN 443
           NK++     N+N HK+H+ FVR   +  YN++ +
Sbjct: 832 NKKLAAKQINNN-HKEHLSFVRDPEQMPYNQVNS 864


>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
          Length = 314

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 95  HIVSLMCYTCVIVFDIKIKYIINLNACKLKTSHLIIQ 205
           H++ L+C+T  +  ++ I Y+I    C+L +  L I+
Sbjct: 187 HLILLICFTLALYRNVTINYLILTLVCELHSVFLHIR 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,911
Number of Sequences: 37544
Number of extensions: 392003
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)