Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01r
         (724 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   4.1  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    24   4.1  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    24   5.5  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   5.5  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.2  

>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 95  HIVSLMCYTCVIVFDIKIKYII 160
           +++SL  Y C +VFD+ + Y +
Sbjct: 80  NVISLAGYFCDVVFDVVLGYAL 101


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 569 PQHIKQYLRSQV*NGGSRI-PRSAHNHNDGHYQYHCP 676
           P H+   + S V NG S      AH H+  H+ +H P
Sbjct: 478 PHHVSPGMGSTV-NGASLTHSHHAHPHHHHHHHHHHP 513


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 300 GLNTVFFLCEICNRNKQMGRTDYNS 374
           G  TV  LCEI NR+++   +D NS
Sbjct: 261 GAYTVI-LCEISNRSREKETSDSNS 284


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 140 YQIQSHKCNTLNLQCEYNLSVIFIENKA*HNDKQSDFGLLIKVM 9
           +++   KCN L ++   + S + IE    H D  S     +++M
Sbjct: 68  HELLESKCNALKIETNDDYSFLQIEKNEPHRDFDSQQLEAVQIM 111


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 453 LHHTSEYKIEFTKRFHFH 506
           LH+T+ + I   KRF FH
Sbjct: 510 LHYTARHPIGSLKRFGFH 527


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,927
Number of Sequences: 2352
Number of extensions: 17875
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)