Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01r
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA...    29   2.5  
AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   7.8  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    28   7.8  

>D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA
           thiolase protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 375 NAHKKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRF 497
           NA K+HM      R+H Y KI    +LH     K +FTK F
Sbjct: 161 NAAKEHMEKYGSKREH-YAKIAYKNHLHSVHNPKSQFTKEF 200


>AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical
           protein Y57A10C.6 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 375 NAHKKHMLFVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRF 497
           NA K+HM      R+H Y KI    +LH     K +FTK F
Sbjct: 161 NAAKEHMEKYGSKREH-YAKIAYKNHLHSVHNPKSQFTKEF 200


>Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK896.6 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 405 SQIACAFYVHLNYNQFCPFVCFYYKSHTKKKL 310
           +Q++ A +V +  +   PF+C+Y K H + +L
Sbjct: 124 AQLSNAKWVTVRSSLMLPFICYYQKGHNRNQL 155


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 483 TLFCIQRYDVDMVYLLFYCMCVSCAISQIACAFYVHLNYNQF 358
           T+FC   Y + + YL +YC+     IS I   +     Y+ F
Sbjct: 599 TIFCAIFYIIFIAYLTYYCLVAMEFISPIQTKWLAEPIYHDF 640


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 314  NCIQSLLDIYFSPEWPSVIGLIN*FGS 234
            N +Q LL   +SPEWP+   ++   GS
Sbjct: 1080 NFLQELLSALYSPEWPAAEMILTALGS 1106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,276
Number of Sequences: 27780
Number of extensions: 404840
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)