Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01r
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 448 GVFVILLYVCFLCNLTNSMC 389
           GVF+I     F CN+ +++C
Sbjct: 626 GVFLICWLPFFTCNIMDAIC 645


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 641 NHNDGHYQYHCPDQHKI 691
           + N   Y+Y CPD  K+
Sbjct: 276 SENPADYRYFCPDGSKV 292


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 641 NHNDGHYQYHCPDQHKI 691
           + N   Y+Y CPD  K+
Sbjct: 276 SENPADYRYFCPDGSKV 292


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 641 NHNDGHYQYHCPDQHKI 691
           + N   Y+Y CPD  K+
Sbjct: 276 SENPADYRYFCPDGSKV 292


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 602 PVNVDIVLYAVVTYLFSIKY 543
           P +V I++Y ++TY+  + Y
Sbjct: 318 PEDVLIIIYTILTYMSGVFY 337


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 299 LLDIYFSPEWPSVIGL 252
           LLD +F P+W  V+ L
Sbjct: 645 LLDKFFFPKWLQVLAL 660


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 702 MTCQILCWSGQW 667
           +TC +L W  +W
Sbjct: 62  VTCDVLSWQSKW 73


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  CIHIVSLMCYTCV 127
           C++IV+  C TC+
Sbjct: 290 CVNIVTSYCKTCI 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,962
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)