Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.0  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.0  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   3.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   6.1  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   8.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   8.1  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 218 LAIPLTRQAAHALPMSVEMFLFNLI 144
           +AI L   A H LPM V  FL++L+
Sbjct: 392 VAIHLVLDAVHKLPMQVYFFLYSLM 416


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 76  IYFKKYSRNCHTRPKQH----NRYIYCIKLNKNISTDMGNAC 189
           IYFKKY  +C      H       I  +KLN+NI  D G+ C
Sbjct: 504 IYFKKYDADCLPMTFIHIATSAARIILVKLNENIPED-GDVC 544


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 LSCQWDS*SRSMDWKRFMVINSTWIQDC 278
           L C + + S++  WK   V+   WI DC
Sbjct: 106 LVCSFLTPSKARQWKHQKVVKPEWIVDC 133


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 61  YNSECIYFKKYSRNCHTRPKQHNRYIYCIKLNKNI 165
           +N + +   +Y+++C  R K+    +YC+K  K++
Sbjct: 75  WNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHL 109


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 154 NKNISTDMGNACAACLVN 207
           NK+I  DMGN CA+ L +
Sbjct: 103 NKSIEIDMGNQCASGLAD 120


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 162 VLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHS--HLTVTLRSGWI 10
           V+     V + V+    CV +  +FL      I +  ++S   L VT+   W+
Sbjct: 155 VIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKVIAVGLYNSKKDLVVTIWLAWV 207


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  NLFNTIVNVYILRNIPGIVTQDLNNTTAIS 139
           N+   I  VY+ + IPG+    L+ + AIS
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHESLAIS 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,066
Number of Sequences: 5004
Number of extensions: 47155
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)