Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01f
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0398 - 22598895-22599100,22599865-22599943                       28   6.2  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   8.2  

>02_04_0398 - 22598895-22599100,22599865-22599943
          Length = 94

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 282 GGSRESGCCSYVIHW-ECLSC 341
           GG    GCC +  HW ECL C
Sbjct: 73  GGHCRWGCCGHRNHWGECLRC 93


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 100 NCHTRPKQHNRYIYCIKLNKNISTDMGNACAAC 198
           +CH      ++ + C+ L ++I  D    CAAC
Sbjct: 384 SCHIECALQHQKVGCVDLGQSIQLDGNYCCAAC 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,473
Number of Sequences: 37544
Number of extensions: 273393
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)