Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01f
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          31   0.91 
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   3.7  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     28   4.8  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                28   6.4  
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                27   8.5  

>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -1

Query: 198 TSSTRITHVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHSHLTVTLRS 19
           +S TR+     NV   +  + I   +FR   ++  +F   ++ T+V+    S + VT+ S
Sbjct: 50  SSLTRLVTYSSNVTRDVTVISIVTSIFRISSSVISVFTLSFSVTLVVTVISSVIVVTISS 109

Query: 18  GWITEV 1
             +T V
Sbjct: 110 S-VTSV 114


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 303 CCSYVIHWECLSCQYYCTS 359
           CCS  +H +C SC+  C+S
Sbjct: 262 CCSCRVHMKCSSCRVVCSS 280


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 NCHTRPKQHNRYIYCIKLNKNISTDMGN 183
           NCH   KQHNR++  ++ N+ +     N
Sbjct: 456 NCHLMDKQHNRHLMNMQQNRQLMDKQTN 483


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 339  CQY-YCTSYLKNDEGMIH*RKNMKGLITKTVTINLY*KKG 455
            C Y    SY+++     H ++N+K L++K  TIN Y KKG
Sbjct: 3564 CHYGRINSYIRSFVYFCHKKENLKLLLSKIATIN-YEKKG 3602


>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 23  RRVTVKCEWNLFNT-IVNVYILR 88
           R V+++CEWNL N  + N+++L+
Sbjct: 199 RNVSLQCEWNLKNLYLANIHLLQ 221


>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 508 QIFHQSTNKKIQ*KYCSKPFF 446
           Q+F QS  KK + K CS PF+
Sbjct: 190 QLFQQSATKKEKEKLCSPPFY 210


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 196 KQHTHYPCLWK 164
           KQ  HYPCLWK
Sbjct: 201 KQPCHYPCLWK 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,197
Number of Sequences: 59808
Number of extensions: 342118
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)