Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01f
         (582 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY047503-1|AAK77235.1|  615|Drosophila melanogaster GH01279p pro...    29   3.5  
AE014296-901|AAF47941.2|  615|Drosophila melanogaster CG7509-PA ...    29   3.5  
BT029956-1|ABM92830.1|  603|Drosophila melanogaster IP17430p pro...    29   6.1  
AY129463-1|AAM76205.1|  564|Drosophila melanogaster SD04753p pro...    29   6.1  

>AY047503-1|AAK77235.1|  615|Drosophila melanogaster GH01279p
           protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 SSTRITHVCGNVLVQLNTVDIAVVLFRSCVTIPG-IFLKIYTFTIVLNKFHSHLT 34
           ++ RI+H+ GN  V+LN ++   +   S  +IP  +FL +   T  L  F ++LT
Sbjct: 381 TTNRISHIDGNAFVELNNLNELFLGQNSMSSIPADLFLNVSALT-RLTLFSNNLT 434


>AE014296-901|AAF47941.2|  615|Drosophila melanogaster CG7509-PA
           protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 SSTRITHVCGNVLVQLNTVDIAVVLFRSCVTIPG-IFLKIYTFTIVLNKFHSHLT 34
           ++ RI+H+ GN  V+LN ++   +   S  +IP  +FL +   T  L  F ++LT
Sbjct: 381 TTNRISHIDGNAFVELNNLNELFLGQNSMSSIPADLFLNVSALT-RLTLFSNNLT 434


>BT029956-1|ABM92830.1|  603|Drosophila melanogaster IP17430p
           protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 186 RITHVCGNVLVQLNTVDIAVVLFRS-----CVTIPGIFLKIYTFTIVLNKFHSHLTVTLR 22
           + T   GN ++ + T ++     R+     C    G+ L +  +  +LNK   HL +TL 
Sbjct: 505 KFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAGLALILTPYLSLLNKIEGHLLMTLL 564

Query: 21  SGW 13
           + W
Sbjct: 565 TAW 567


>AY129463-1|AAM76205.1|  564|Drosophila melanogaster SD04753p
           protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 186 RITHVCGNVLVQLNTVDIAVVLFRS-----CVTIPGIFLKIYTFTIVLNKFHSHLTVTLR 22
           + T   GN ++ + T ++     R+     C    G+ L +  +  +LNK   HL +TL 
Sbjct: 466 KFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAGLALILTPYLSLLNKIEGHLLMTLL 525

Query: 21  SGW 13
           + W
Sbjct: 526 TAW 528


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,720,536
Number of Sequences: 53049
Number of extensions: 495380
Number of successful extensions: 882
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)