Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k01f
(582 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 3.8
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 3.8
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 3.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 3.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 3.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.8
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 5.1
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 5.1
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 5.1
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 5.1
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 22 5.1
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 5.1
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 22 5.1
AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 22 5.1
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 5.1
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 8.9
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 21 8.9
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 264 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 356
W+ D RE G + W+ + +YY T
Sbjct: 58 WVLDKLKAERERGITIDIALWKFETAKYYVT 88
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 90 NNYNYNNNYNNYNKHNYNKLYYNIN 114
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 323 NNYNYNNNYNNYNKHNYNKLYYNIN 347
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 510 NKFSTKVQIKRYNKNTVLNLFFNIN 436
N ++ YNK+ L++NIN
Sbjct: 323 NNYNYNNNYNNYNKHNYNKLYYNIN 347
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Frame = +3
Query: 495 WWKICLS-RTPAL 530
WWKIC + TPA+
Sbjct: 490 WWKICWTITTPAI 502
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Frame = +3
Query: 495 WWKICLS-RTPAL 530
WWKIC + TPA+
Sbjct: 543 WWKICWTITTPAI 555
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 513 INKFSTKVQIKRYNKNTVLNLFFNIN 436
I+ S YN N L +NIN
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNIN 107
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 264 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 356
W+ D RE G + W+ + +YY T
Sbjct: 1 WVLDKLKAERERGITIDIALWKFETSKYYVT 31
>AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein.
Length = 50
Score = 21.8 bits (44), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 91 YSRNCHTRPKQHNRYIY 141
++ +C +PK HN IY
Sbjct: 23 WALDCSIKPKDHNGSIY 39
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 264 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 356
W+ D RE G + W+ + +YY T
Sbjct: 58 WVLDKLKAERERGITIDIALWKFETSKYYVT 88
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 477 YNKNTVLNLFFNIN 436
YN N L++NIN
Sbjct: 318 YNNNNYKKLYYNIN 331
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -2
Query: 431 GHGFSNETLHILPLVYHALIILEV 360
G+G + +T H+LP + +++ V
Sbjct: 58 GYGSNKKTRHMLPTGFRKVLVHNV 81
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,764
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 29
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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