Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j23f
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...   136   8e-33
AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...   133   1e-31
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...   133   1e-31
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...   127   7e-30
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...   126   1e-29
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...   115   2e-26
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    31   0.82 
Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical p...    28   4.4  
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score =  136 bits (330), Expect = 8e-33
 Identities = 61/122 (50%), Positives = 79/122 (64%)
 Frame = +3

Query: 228 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 407
           L +  +  +  LP    K  ATY+WIDG+GEHLR K RT+N  P+   + PIWN+DGSST
Sbjct: 12  LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71

Query: 408 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 587
            QADG NSD YL P A++ DPF  G ++LVMCDT  + M+PT +N+R  C E   K  D 
Sbjct: 72  GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQ 131

Query: 588 EP 593
           +P
Sbjct: 132 QP 133


>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/102 (57%), Positives = 72/102 (70%)
 Frame = +3

Query: 288 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 467
           A YIWIDGSGE++R K RT +F P  P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89

Query: 468 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEP 593
           PFR+G + LVMC+TY    +PT +N R  C+E  +K  D  P
Sbjct: 90  PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHP 131


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/102 (57%), Positives = 72/102 (70%)
 Frame = +3

Query: 288 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 467
           A YIWIDGSGE++R K RT +F P  P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92

Query: 468 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEP 593
           PFR+G + LVMC+TY    +PT +N R  C+E  +K  D  P
Sbjct: 93  PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHP 134


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score =  127 bits (306), Expect = 7e-30
 Identities = 56/122 (45%), Positives = 77/122 (63%)
 Frame = +3

Query: 228 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 407
           L +  +  +  LP    K  ATY+WIDG+GE LR K RT N  P+   + PIWN+DGSST
Sbjct: 12  LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71

Query: 408 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 587
            QA+G NSD YL P A++ DPF +G+++LVMC+T    M+PT +N+R +C     K  + 
Sbjct: 72  GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131

Query: 588 EP 593
            P
Sbjct: 132 HP 133


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score =  126 bits (304), Expect = 1e-29
 Identities = 58/122 (47%), Positives = 79/122 (64%)
 Frame = +3

Query: 228 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 407
           L   ++ ++  L     KI ATY+WIDG+GE+LR K RT + +PK  +D PIWN+DGSST
Sbjct: 12  LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71

Query: 408 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 587
            QA G +SD YL P A Y DPF  G + LVMCDT  + M+PT +++R +C E   + +D 
Sbjct: 72  GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDT 131

Query: 588 EP 593
            P
Sbjct: 132 RP 133


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score =  115 bits (277), Expect = 2e-26
 Identities = 48/100 (48%), Positives = 68/100 (68%)
 Frame = +3

Query: 294 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 473
           YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G  SD Y+ P A+Y+DPF
Sbjct: 35  YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94

Query: 474 RRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEP 593
           R G + + +C+T  ++ +P  +N R  C +  +K KD EP
Sbjct: 95  RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEP 134


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 593 GLIILAFVVSFLTTDAIVALCWLHVVFIRITHNEDVISSTEWILVNSTRYEVGIRIV 423
           G I++  VVSF+TT   V   W   VF   T N  + +    I   ST  E+ ++ V
Sbjct: 27  GFILMIIVVSFITTALAVQTLWYKNVFPFCTKNLLLSAIVNGIFHQSTVAEIRLKTV 83


>Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 581 LAFVVSFLTTDAIVALCWLH 522
           LA V+SFLT  AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256


>Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 581 LAFVVSFLTTDAIVALCWLH 522
           LA V+SFLT  AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 141 KMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLP 272
           K  +  HT  E  P+IL  P++ + P  +      + +N+L  P
Sbjct: 375 KQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTP 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,746
Number of Sequences: 27780
Number of extensions: 325761
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)