Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j20r
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-12|AAK31457.2|  180|Caenorhabditis elegans Hypothetical p...    62   2e-10
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    31   0.70 
AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm rece...    31   0.93 
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U29535-12|AAK31457.2|  180|Caenorhabditis elegans Hypothetical
           protein C25H3.9a protein.
          Length = 180

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 31/136 (22%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
 Frame = -3

Query: 514 LKGSHGERTMALQPSRWQWHKFKDMLHFYMM-VGLIPAGALIFYCNVFIGPAQLTPIP-E 341
           ++ SH       +P +   ++ KD+ HFY + +G +P    + Y ++  G  +L   P E
Sbjct: 24  IRSSHAA-VFRKRPGQLIVNRIKDVCHFYFIGIGFLPVLFCLAYNHIVYGTCELKDYPTE 82

Query: 340 GYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAER 161
           G  P +W++ R PI ++ A++   +  + +E+ + + +++    + R +E+ +     ER
Sbjct: 83  GPAPHHWQFERTPIRQWWAKWFGVSDVEHHERNLAYYEKQGILARWRQIEQRVKHLEGER 142

Query: 160 QDYQAYYYKPMVNKYL 113
            DY+ + Y+P+ + ++
Sbjct: 143 WDYKGWSYQPVSSTWV 158


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -3

Query: 577 VKNSLKSPNKIQNVTFTTAKTLKGSHGE 494
           VK  L+ PNKIQ+V +++ K LKG+ GE
Sbjct: 282 VKIGLRKPNKIQSVRYSSRK-LKGTFGE 308


>AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 155 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 360 N*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNL 241
           N  L+ KDI  N G TT++  P LL+  F T   R ++NL
Sbjct: 194 NQDLTAKDIMANLGLTTSMVIPILLIVFFGTKTYRKVKNL 233


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 387 TVTYSLGRRN*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRI 253
           TV   L  R+ H    D++P+ G+T  IQ   L +  FT+   R+
Sbjct: 523 TVGVKLAHRDLHTMTLDVQPSNGTTVPIQFQILHVFPFTSERKRM 567


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 547 IQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAG---ALIFYCNV 377
           +QN      K +K  +G+R   L     + H  +D  + Y++V L+P G    L   CN 
Sbjct: 744 LQNTDGANYKCIKIENGDRMPQLVARALEKHLIEDDKNTYLLVQLLPRGGEFVLPDNCNP 803

Query: 376 FIGPA 362
           F   A
Sbjct: 804 FYAMA 808


>Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical
           protein C41G6.14 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 433 FYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGYT 332
           FY++   I    L+F+  V + P  L+PI  GY+
Sbjct: 49  FYLLGFQISCVLLVFHATVLMEPLSLSPICAGYS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,099
Number of Sequences: 27780
Number of extensions: 370987
Number of successful extensions: 998
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)