Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j19f
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.13 
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    31   0.17 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.6  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   4.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.3  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 363  SCLELLCCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 506
            +CL  L  +  + KY+   F  +D   R + V    R+SG +L L HG
Sbjct: 2514 NCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRISGNLLTLLHG 2561


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 80  GNAIRENAETSNVKDKNTTANDLDKPVDYENK--EECFQIGHSCTNHKDCCTNA 235
           GN   EN   + + D N     L KP  +EN    + F +G +   HK  C++A
Sbjct: 172 GNTSMENLADTIMTDLNNIWASLSKPEGFENSVINDFFDVGFTGLPHKILCSDA 225


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 578 ISQIHKWYNDFKVKYPDLWKISESAMKEIQHFAAN 474
           IS + ++YN + + Y + W  ++   K +Q   AN
Sbjct: 259 ISLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKAN 293


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 272 RTLKRISSHNPDTHSCNSPYGWYRNVQSENIL 177
           R+ +   S  PDT SC SP+G  R   + NIL
Sbjct: 150 RSFRIEESVQPDTMSCLSPWGTERLTATINIL 181


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +3

Query: 147 WTNPWIMKIKKNVFRL---DIPVPTI---RTVARMRVWVMRRNAFQGPGKSG*KTCRLFY 308
           WT    M +KK+ FRL   D+P+  +     VA  R +VM R      G    KT  LFY
Sbjct: 511 WTGKIPMFVKKSTFRLAPPDVPIIMVGPGTGVAPFRGFVMERANLASKGVKVAKTL-LFY 569


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 524 WKISESAMKEIQHFAANPPDLTHLNHP 444
           + I  S  K++ HF  + P  TH  HP
Sbjct: 879 YTIGTSNAKDVSHFVFSCPYYTHFCHP 905


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 489 TFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAPNK 364
           TFCR    LD P P+  P   N +L   +   S+  +  PNK
Sbjct: 218 TFCR---MLDEPLPANNPVQSNSRLVPLMKDFSNDIKHTPNK 256


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 224 NSPYGWYRNVQSENILLYFHN 162
           +SP  WY  VQS +  LY HN
Sbjct: 209 SSPREWYTFVQSISKHLYIHN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,811
Number of Sequences: 5004
Number of extensions: 61206
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)