Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j16r
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.18 
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   9.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.2  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   9.2  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 98  YNNNNF*LISFSPNSQQSYRKDTRYLSHHTDS*KRSNKVSYTLQKYLNND*VPTTTNKSQ 277
           YNNNN      S N+ Q +++ +  L     S   S+  +   Q Y NN+      N +Q
Sbjct: 574 YNNNN------SGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQ 627

Query: 278 ENNENETSSQ 307
             N N  SSQ
Sbjct: 628 NYNNNNNSSQ 637


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 615 IKSFAKARQFYFHTSEKTLNLSMFLR 692
           IKS AKAR+ ++ T  KT  L+ F R
Sbjct: 246 IKSLAKARKRFYETDLKTTFLNAFSR 271


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 474 HGCCALCRKKKVYCEH 427
           H C A CR+KK+ C+H
Sbjct: 21  HSCLA-CRRKKLKCDH 35


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 477 DHGCCALCRKKKVYCEHFLCRFIIY*FYNCD 385
           +  C   C K+++YCEH +C+   +  + CD
Sbjct: 724 ESSCKKECGKRRMYCEH-VCQSPCHAGHPCD 753


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 574 HTLECYIKMTRIRKLRVSLKHDNFIFI 654
           H L  Y+K+  + K R+ +++D+FI +
Sbjct: 215 HLLGDYVKLEMLEKERIVVENDSFIVV 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,859
Number of Sequences: 5004
Number of extensions: 61268
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)