Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j16r
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channe...    37   0.018
AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying de...    37   0.018

>AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channel
           EGL-2 protein.
          Length = 956

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +1

Query: 496 NYVKHHFAMQ--NTLPYK--YI*KKNYRKLHTLECYIKMTRIRKL-RVSLKHDNFIFIHQ 660
           NY K  F +   + LPY   Y+ K++  ++ +L   +K+ R+ +L RV+ K DN++    
Sbjct: 303 NYFKSWFLIDLLSCLPYDIFYMFKRDDERIGSLFSALKVVRLLRLGRVARKLDNYLEYGA 362

Query: 661 KKR*ISLCFYVNILIWYSEVFVW 729
               + LC YV +  W + V+ W
Sbjct: 363 ATLLLLLCAYVIVAHWLACVWFW 385


>AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying
           defective protein 2 protein.
          Length = 956

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +1

Query: 496 NYVKHHFAMQ--NTLPYK--YI*KKNYRKLHTLECYIKMTRIRKL-RVSLKHDNFIFIHQ 660
           NY K  F +   + LPY   Y+ K++  ++ +L   +K+ R+ +L RV+ K DN++    
Sbjct: 303 NYFKSWFLIDLLSCLPYDIFYMFKRDDERIGSLFSALKVVRLLRLGRVARKLDNYLEYGA 362

Query: 661 KKR*ISLCFYVNILIWYSEVFVW 729
               + LC YV +  W + V+ W
Sbjct: 363 ATLLLLLCAYVIVAHWLACVWFW 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,809
Number of Sequences: 27780
Number of extensions: 332991
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)