Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j16f
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5HMV4 Cluster: Methyltransferase domain protein; n=1; ...    33   5.9  
UniRef50_Q18BN2 Cluster: Putative uncharacterized protein; n=2; ...    33   7.7  

>UniRef50_Q5HMV4 Cluster: Methyltransferase domain protein; n=1;
           Staphylococcus epidermidis RP62A|Rep: Methyltransferase
           domain protein - Staphylococcus epidermidis (strain ATCC
           35984 / RP62A)
          Length = 228

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -3

Query: 260 TFDNFVEHVHKSLPGQKK*NLLLRHLGSCFTKRNV*DTIITYDLDDVTIS-SSILRNIIY 84
           T + F EHV KS+P  K+ + +++ +G  F + N       YD+   T +    + NI+ 
Sbjct: 15  TANEFNEHVEKSVPFYKEIHKIVKIIGGFFVEENT----NVYDIGSSTGNLLKGMSNILK 70

Query: 83  KHTAYLNLDNT 51
           ++  Y+ +DN+
Sbjct: 71  RNANYIGIDNS 81


>UniRef50_Q18BN2 Cluster: Putative uncharacterized protein; n=2;
           Clostridium difficile|Rep: Putative uncharacterized
           protein - Clostridium difficile (strain 630)
          Length = 146

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 234 DVLYKIVECRCNHYLFL-VKMKS*HNII--CPNEYFTITKLVYLRKNIERFNVFSDV 395
           D+L+K  + R ++Y +L +K+K+ +  I  C NEY     +VY  K    +N+ S V
Sbjct: 6   DILFKETDKRLHNYKYLDIKIKNINLDIKRCENEYSGCGAMVYTEKTSNTYNISSSV 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,879,693
Number of Sequences: 1657284
Number of extensions: 10824443
Number of successful extensions: 20593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20591
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)