Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j16f
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.5  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    21   6.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 448  D*NTKIKSFAKARQFYFHTSEKTLNLSMFLRKYTN 344
            D NTK      A +   H  +K  N SM +  YT+
Sbjct: 1148 DENTKDTKITAASETILHGLKKYTNYSMEVLAYTS 1182


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 478 FPVIFFLNIFIG*SVLHSKMVFYV 549
           F VIF + +++  +V HSK+  ++
Sbjct: 84  FEVIFIVTVWMTGAVKHSKIAHFL 107


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 569 LPAHYSTT*NTILLCKTLYPINIFKKKITG--NYILWNVTSK 450
           LP H+    +        Y  ++F++KITG  N ++ NV ++
Sbjct: 21  LPEHWEGVLDATKPGNVCYQRDLFRQKITGSENCLVLNVYTR 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,731
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)