Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j16f
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   5.3  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.0  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.0  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   7.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.3  

>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 433 IKSFAKARQFYFHTSEKTLNLSMFLRKYTNLVIVKY 326
           IKS AKAR+ ++ T  KT  L+ F R    L++V Y
Sbjct: 246 IKSLAKARKRFYETDLKTTFLNAFSRDEL-LMLVNY 280


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 VEIVSYYCISNIPFCKARP*MA*KQILFFLPWK 224
           V +  YYC  NI      P  +  +++FFLPW+
Sbjct: 319 VVLPEYYCPPNIGILD--PSTSDNRVMFFLPWQ 349


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 574 HGCCALCRKKKVYCEH 621
           H C A CR+KK+ C+H
Sbjct: 21  HSCLA-CRRKKLKCDH 35


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 474 HTLECYIKMTRIRKLRVSLKHDNFIFI 394
           H L  Y+K+  + K R+ +++D+FI +
Sbjct: 215 HLLGDYVKLEMLEKERIVVENDSFIVV 241


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 306 YVTISFLPKINNDCTYIRQFCRARPQITSRAEKIKFAFTPF 184
           Y TIS LPK  +D T +     +RP+       +     PF
Sbjct: 160 YQTISALPKPRHDPTVLGALVMSRPKTWDPRTHVDVVIDPF 200


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 534 FAMQNTLPYKYI*KKNYRKLHTLECYIKMTRIRKLRVSLK 415
           F   N LP+ +   K  R L+ L C    TR+  L+   K
Sbjct: 701 FLNNNILPFGHPFVKECRSLYNLACIYSKTRLTYLQAFAK 740


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 580 IRGLYQLTIQLRK--TPFCYAKHFTL*IYLKKKLQEITYFGMLHQND*NTKIKSFAK 416
           ++  Y + IQLRK  +P   +      +Y+   L+ + YF    +   N K+KS ++
Sbjct: 800 VQNAYDVLIQLRKLESPLNKSPSREHTVYISTSLEPLKYFYDAIEQSTNLKLKSISQ 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,690
Number of Sequences: 5004
Number of extensions: 52586
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)