Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15r
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...   238   7e-64
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    33   0.058
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    32   0.10 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    29   0.54 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    29   0.95 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   3.8  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    26   5.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   8.9  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
            subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score =  238 bits (582), Expect = 7e-64
 Identities = 114/176 (64%), Positives = 143/176 (81%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            F+ACQ+L+ YHE+RGDK IVFSDNV+ALR YA+K+ K +IYG T Q ER++IL+NF++N 
Sbjct: 550  FQACQFLIDYHEKRGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQERMRILENFQYNE 609

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
             VNTIF+SKV DTS DLPEA  LIQISSH GSRRQEAQRLGRILRAK+    E +NAFFY
Sbjct: 610  LVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR-RNDEGFNAFFY 668

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
            +LVS+DT EM YS KRQ FL++QGY++KVIT LKGM+  P++ Y ++ E+  LL +
Sbjct: 669  SLVSKDTQEMYYSSKRQAFLIDQGYAFKVITNLKGMENLPNLAYASKAERLELLQE 724


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 663 AVKMNKPYIYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQIS 496
           A K N   I+G  SQ  R+Q L +FK + K   +  + VA    D+P+  ++I ++
Sbjct: 438 ARKYNVVGIHGDMSQGARLQALNDFK-SGKCPVLVATDVAARGLDIPKVQLVINVT 492


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = -3

Query: 741 YLVRYHERRGDKTIVFSDNVFALRHYAVKMNK----PY-IYGPTSQSERIQILQNFKFNP 577
           YL     R   KT+VF++ +  ++     +N+     Y ++    Q +R+Q L+ FK NP
Sbjct: 380 YLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNP 439

Query: 576 KVNTIFVSKVADTSFDLPEANVLI 505
           K   +  + VA    D+P    +I
Sbjct: 440 K-GVLVCTDVAARGIDIPSVTHVI 462


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 639 IYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQ 502
           +Y P   SE++ I    KF P  ++ F  ++A  +FD P ANV+++
Sbjct: 197 VYMPRQASEKL-IRWMSKF-PDAHSCFFEQIAPATFDHPFANVMVK 240


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 639 IYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQR 460
           ++G T+ SER  ++Q+F+   K   +    V     D+P  + L+ I+    S     Q 
Sbjct: 295 LFGETNDSERETLIQDFR-KKKFPVLVNCMVLTEGTDIPNIDCLM-IARPTSSPNLLTQM 352

Query: 459 LGRILRAKKG 430
           +GR LR  +G
Sbjct: 353 IGRGLRLHEG 362


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 536 LVSATLLTNIVFTLGLNLKFWRICIRSLWDV 628
           + +ATL T++ F L L + FW  CI    D+
Sbjct: 70  MYTATLGTHVFFMLALPIFFWSGCIYYTLDI 100


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 720 RRGDKTIVFSDNVFALRHYAVKMNKPYIY 634
           RRG ++I   D  F +RH   K+N+   Y
Sbjct: 56  RRGSRSITVEDLFFLIRHDRAKVNRLKTY 84


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 94  TQQTSSLQEVPILDPLGTLSVPS-PLA 17
           T   +SLQ VP LDP+ +L++ S P+A
Sbjct: 374 TSDNNSLQAVPRLDPVPSLTLSSTPVA 400


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 551 LLTNIVFTLGLNLKFWRICIRSLWDVGP*MYGLFILTA*CLSAN 682
           ++ NI+   G NLK WRI +++ +      Y +F L    L  N
Sbjct: 558 IVENIMQNNGTNLKNWRILLKASYKFWLRTYRVFFLNNGTLPLN 601


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 404 FSTL*YH--KTPWRWLTVEKDKDFLLIRVTVIRL*Q 303
           F  L YH    PW+ L   KDKD+ L   T  RL Q
Sbjct: 482 FYVLNYHGPDVPWQELRSTKDKDYCLSLETNSRLKQ 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,933
Number of Sequences: 5004
Number of extensions: 44964
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)