Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15r
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394...   223   1e-58
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    30   1.7  
04_04_1652 - 35066814-35067659                                         29   5.3  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    29   5.3  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    28   9.3  

>01_06_0338 + 28538951-28538966,28539073-28539183,28539311-28539479,
            28540841-28541063,28541148-28541204,28541718-28541861,
            28541939-28542019,28543026-28543113,28543579-28543943,
            28544011-28544086,28544174-28544367,28544846-28545009,
            28545080-28545152,28545237-28545350,28545839-28545919,
            28546043-28546102,28546180-28546289,28546325-28546501,
            28546599-28546683
          Length = 795

 Score =  223 bits (545), Expect = 1e-58
 Identities = 114/183 (62%), Positives = 141/183 (77%), Gaps = 7/183 (3%)
 Frame = -3

Query: 756  FRACQYLVRYHER-RGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFN 580
            FRAC++L+R+HE+ RGDK IVF+DN+FAL  YA+K+ KP IYG TS  ER +IL  FK +
Sbjct: 518  FRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNS 577

Query: 579  PKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK---KGALA---E 418
              VNTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK   +  +A   E
Sbjct: 578  SDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKE 637

Query: 417  EYNAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTL 238
            EYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L   ++ P++ Y T  +Q  L
Sbjct: 638  EYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEELPNLKYYTLNDQLEL 697

Query: 237  LSQ 229
            L+Q
Sbjct: 698  LAQ 700


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -3

Query: 639 IYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQR 460
           I+G  SQSER ++L +F+ + +   +  + VA    D+ +  V+I      G       R
Sbjct: 424 IHGDKSQSEREKVLSHFR-SGRSPILVATDVAARGLDIKDIRVVINYDFPTGI-EDYVHR 481

Query: 459 LGRILRAKKGALAEEYNAF 403
           +GR  RA  GA    Y  F
Sbjct: 482 IGRTGRA--GATGVAYTFF 498


>04_04_1652 - 35066814-35067659
          Length = 281

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 106 PRQPTQQTSSLQEVPILDPLGTLSVPSPLA 17
           P  PTQ+ + L+ +P +D     S PSP A
Sbjct: 123 PAAPTQERTILKRLPAMDLASLASTPSPAA 152


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 495 SHGGSRRQEAQRLGRILRAKKGALAEE 415
           +HG SRR EA++LG  + A+   L E+
Sbjct: 439 AHGDSRRAEAEKLGPAIEARARRLRED 465


>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
            4683834-4684204,4684290-4684835,4684927-4685027,
            4685117-4685933,4686025-4686213,4686313-4686384,
            4686477-4686587,4686647-4686652,4686694-4686794,
            4687714-4687813,4687891-4687986,4688157-4688273,
            4688367-4688492,4688566-4688619,4688745-4688992,
            4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 474  QEAQRLGRILRAKKGALAEEYNAFFYTLVSQDTLEMAYSRKRQRFLV 334
            Q A+   R+ RA+KG ++    + FY    + T E  Y  +  RF++
Sbjct: 2137 QNAEPESRLTRARKGCMSLPDVSSFYVKSVKPTQERVYGSRTVRFML 2183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,178,254
Number of Sequences: 37544
Number of extensions: 307161
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)