Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15r
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   1.9  
DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasm...    24   5.9  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +2

Query: 422  AKAPFFALKIRPNLCASCRLEPP----CEEICISTFASGRS-KLVSATLLTNIVFTLGLN 586
            +K P    K +P  C+ CR   P     E +C+    SG S + V A  L     TLG N
Sbjct: 1152 SKTPILNRKEKPKSCSVCRQISPTVNSTEPVCVKCRKSGNSHQEVPADELMKKDATLGGN 1211


>DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasmic
           carbonic anhydrase protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 390 VSQDTLEMAYSRKRQRFLVNQGYSYKVITELKG 292
           + ++ L   Y  +  R LVN GY ++V    KG
Sbjct: 44  LQENPLRWTYVPENTRSLVNPGYCWRVDVNGKG 76


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,158
Number of Sequences: 2352
Number of extensions: 10396
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)